Analysis of interatomic Contacts of Structural Units in PDB entry:
6RNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RNK entry

There are 2 chains in PDB entry 6RNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 7LEU 305
B
 GLU 9LEU 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6RNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 20Right-handed alpha
Helix 2
AA2
A
20 48Right-handed alpha
Helix 3
AA3
A
52 82Right-handed alpha
Helix 4
AA4
A
87 122Right-handed alpha
Helix 5
AA5
A
127 130Right-handed 310
Helix 6
AA6
A
131 160Right-handed alpha
Helix 7
AA7
A
161 165Right-handed 310
Helix 8
AA8
A
176 192Right-handed alpha
Helix 9
AA9
A
192 214Right-handed alpha
Helix 10
AB1
A
225 254Right-handed alpha
Helix 11
AB2
A
263 286Right-handed alpha
Helix 12
AB3
A
287 292Right-handed 310
Helix 13
AB4
A
296 305Right-handed alpha
Helix 14
AB5
B
94 98Right-handed 310
Helix 15
AB6
B
111 114Right-handed 310
Helix 16
AB7
B
115 120Right-handed alpha
Helix 17
AB8
B
121 123Right-handed 310
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There are 3 sheets in PDB entry 6RNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
26 34anti-parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
75 80anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
130 134parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
41 47anti-parallel
Strand 5
B
54 59anti-parallel
Strand 6
B
65 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
130 134parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
125 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il