Analysis of interatomic Contacts of Structural Units in PDB entry:
6RNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RNY entry

There are 18 chains in PDB entry 6RNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 39ALA 135
B
 LYS 20GLY 102
C
 LYS 9LYS 118
D
 SER 29LYS 122
E
 HIS 39ALA 135
F
 LYS 20GLY 102
G
 LYS 9LYS 118
H
 SER 29LYS 122
K
 LYS 38GLN 375
L
 PRO 121ASP 273
O
 LYS 38GLN 375
P
 ASP 116ASN 280
I
 G -56 C 71
U
 G -71 G 36
T
 G -73 A -41
J
 G 21 C 73
Q
 A 1 C 18
M
 A 1 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6RNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
64 79Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
50 63Right-handed alpha
Helix 7
AA7
B
65 74Right-handed alpha
Helix 8
AA8
B
82 94Right-handed alpha
Helix 9
AA9
C
29 33Right-handed 310
Helix 10
AB1
C
46 73Right-handed alpha
Helix 11
AB2
C
79 87Right-handed alpha
Helix 12
AB3
C
90 97Right-handed alpha
Helix 13
AB4
D
35 46Right-handed alpha
Helix 14
AB5
D
52 81Right-handed alpha
Helix 15
AB6
D
89 97Right-handed alpha
Helix 16
AB7
D
102 110Right-handed alpha
Helix 17
AB8
D
111 121Right-handed alpha
Helix 18
AB9
E
45 55Right-handed alpha
Helix 19
AC1
E
64 79Right-handed alpha
Helix 20
AC2
E
85 114Right-handed alpha
Helix 21
AC3
E
120 132Right-handed alpha
Helix 22
AC4
F
30 41Right-handed alpha
Helix 23
AC5
F
50 63Right-handed alpha
Helix 24
AC6
F
65 74Right-handed alpha
Helix 25
AC7
F
82 94Right-handed alpha
Helix 26
AC8
G
29 33Right-handed 310
Helix 27
AC9
G
46 73Right-handed alpha
Helix 28
AD1
G
79 87Right-handed alpha
Helix 29
AD2
G
90 97Right-handed alpha
Helix 30
AD3
H
35 46Right-handed alpha
Helix 31
AD4
H
52 81Right-handed alpha
Helix 32
AD5
H
89 97Right-handed alpha
Helix 33
AD6
H
102 110Right-handed alpha
Helix 34
AD7
H
111 121Right-handed alpha
Helix 35
AD8
K
53 63Right-handed alpha
Helix 36
AD9
K
72 77Right-handed alpha
Helix 37
AE1
K
85 94Right-handed alpha
Helix 38
AE2
K
162 172Right-handed alpha
Helix 39
AE3
K
192 203Right-handed alpha
Helix 40
AE4
K
219 235Right-handed alpha
Helix 41
AE5
K
245 253Right-handed alpha
Helix 42
AE6
K
254 256Right-handed 310
Helix 43
AE7
K
264 270Right-handed alpha
Helix 44
AE8
K
290 299Right-handed alpha
Helix 45
AE9
K
300 302Right-handed 310
Helix 46
AF1
L
162 177Right-handed alpha
Helix 47
AF2
L
193 203Right-handed alpha
Helix 48
AF3
L
221 229Right-handed alpha
Helix 49
AF4
L
229 235Right-handed alpha
Helix 50
AF5
L
245 255Right-handed alpha
Helix 51
AF6
L
264 271Right-handed alpha
Helix 52
AF7
O
53 63Right-handed alpha
Helix 53
AF8
O
72 77Right-handed alpha
Helix 54
AF9
O
85 94Right-handed alpha
Helix 55
AG1
O
162 172Right-handed alpha
Helix 56
AG2
O
192 203Right-handed alpha
Helix 57
AG3
O
219 235Right-handed alpha
Helix 58
AG4
O
245 253Right-handed alpha
Helix 59
AG5
O
254 256Right-handed 310
Helix 60
AG6
O
264 270Right-handed alpha
Helix 61
AG7
O
290 299Right-handed alpha
Helix 62
AG8
O
300 302Right-handed 310
Helix 63
AG9
P
163 168Right-handed alpha
Helix 64
AH1
P
169 177Right-handed alpha
Helix 65
AH2
P
192 202Right-handed alpha
Helix 66
AH3
P
219 229Right-handed alpha
Helix 67
AH4
P
229 236Right-handed alpha
Helix 68
AH5
P
240 244Right-handed 310
Helix 69
AH6
P
245 253Right-handed alpha
Helix 70
AH7
P
264 270Right-handed alpha
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There are 15 sheets in PDB entry 6RNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
D
85 86parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
D
50 51parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
85 86parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
77 78first strand
Strand 2
H
50 51parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
39 41first strand
Strand 2
K
44 46anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
153 158first strand
Strand 2
K
141 147anti-parallel
Strand 3
K
124 127anti-parallel
Strand 4
K
181 183parallel
Strand 5
K
205 207parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
363 365first strand
Strand 2
K
351 354anti-parallel
Strand 3
K
341 348anti-parallel
Strand 4
K
322 324anti-parallel
Strand 5
K
370 371anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 125first strand
Strand 2
L
181 182parallel
Strand 3
L
205 206parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
141 144first strand
Strand 2
L
155 158anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
39 41first strand
Strand 2
O
44 46anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
153 158first strand
Strand 2
O
141 147anti-parallel
Strand 3
O
124 127anti-parallel
Strand 4
O
181 183parallel
Strand 5
O
205 207parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
363 365first strand
Strand 2
O
351 354anti-parallel
Strand 3
O
341 348anti-parallel
Strand 4
O
322 324anti-parallel
Strand 5
O
370 371anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
153 155first strand
Strand 2
P
144 147anti-parallel
Strand 3
P
124 128anti-parallel
Strand 4
P
181 184parallel
Strand 5
P
205 206parallel
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