Analysis of interatomic Contacts of Structural Units in PDB entry:
6RO0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RO0 entry

There are 12 chains in PDB entry 6RO0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	PHE 235
B	PRO 3	CYS 199
C	PRO 3	CYS 199
D	ASP 1	PRO 110
E	ASP 1	PRO 110
F	LEU 2	GLU 99
G	ASP 2	PHE 235
H	SER 1	CYS 199
I	GLY 4	CYS 199
J	ASP 1	PRO 110
K	ASP 1	PRO 110
L	LEU 2	GLU 99

There are 56 helices in PDB entry 6RO0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	22	Right-handed alpha
Helix 2	AA2	A	31	37	Right-handed alpha
Helix 3	AA3	A	56	77	Right-handed alpha
Helix 4	AA4	A	100	112	Right-handed alpha
Helix 5	AA5	A	113	116	Right-handed 310
Helix 6	AA6	A	117	127	Right-handed alpha
Helix 7	AA7	A	137	139	Right-handed 310
Helix 8	AA8	A	200	207	Right-handed alpha
Helix 9	AA9	A	229	231	Right-handed 310
Helix 10	AB1	B	9	13	Right-handed 310
Helix 11	AB2	B	18	22	Right-handed 310
Helix 12	AB3	B	31	37	Right-handed alpha
Helix 13	AB4	B	38	49	Right-handed alpha
Helix 14	AB5	B	65	68	Right-handed 310
Helix 15	AB6	B	142	144	Right-handed 310
Helix 16	AB7	B	145	160	Right-handed alpha
Helix 17	AB8	C	9	13	Right-handed 310
Helix 18	AB9	C	31	37	Right-handed alpha
Helix 19	AC1	C	38	49	Right-handed alpha
Helix 20	AC2	C	77	82	Right-handed 310
Helix 21	AC3	C	142	144	Right-handed 310
Helix 22	AC4	C	145	160	Right-handed alpha
Helix 23	AC5	C	193	197	Right-handed 310
Helix 24	AC6	D	43	47	Right-handed 310
Helix 25	AC7	D	62	75	Right-handed alpha
Helix 26	AC8	E	43	47	Right-handed 310
Helix 27	AC9	E	62	75	Right-handed alpha
Helix 28	AD1	F	51	66	Right-handed alpha
Helix 29	AD2	G	14	22	Right-handed alpha
Helix 30	AD3	G	31	37	Right-handed alpha
Helix 31	AD4	G	38	42	Right-handed 310
Helix 32	AD5	G	56	77	Right-handed alpha
Helix 33	AD6	G	100	112	Right-handed alpha
Helix 34	AD7	G	113	116	Right-handed 310
Helix 35	AD8	G	117	127	Right-handed alpha
Helix 36	AD9	G	200	207	Right-handed alpha
Helix 37	AE1	G	229	231	Right-handed 310
Helix 38	AE2	H	9	13	Right-handed 310
Helix 39	AE3	H	18	22	Right-handed 310
Helix 40	AE4	H	31	37	Right-handed alpha
Helix 41	AE5	H	38	49	Right-handed alpha
Helix 42	AE6	H	65	68	Right-handed 310
Helix 43	AE7	H	142	144	Right-handed 310
Helix 44	AE8	H	145	160	Right-handed alpha
Helix 45	AE9	I	9	13	Right-handed 310
Helix 46	AF1	I	31	37	Right-handed alpha
Helix 47	AF2	I	38	49	Right-handed alpha
Helix 48	AF3	I	77	82	Right-handed 310
Helix 49	AF4	I	142	144	Right-handed 310
Helix 50	AF5	I	145	160	Right-handed alpha
Helix 51	AF6	I	193	197	Right-handed 310
Helix 52	AF7	J	43	47	Right-handed 310
Helix 53	AF8	J	62	75	Right-handed alpha
Helix 54	AF9	K	43	47	Right-handed 310
Helix 55	AG1	K	62	75	Right-handed alpha
Helix 56	AG2	L	51	66	Right-handed alpha

There are 39 sheets in PDB entry 6RO0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	84	92	anti-parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	155	162	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	97	99	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	225	227	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	87	89	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	60	63	anti-parallel
Strand 3	B	70	73	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	171	173	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	183	190	anti-parallel
Strand 4	B	128	135	parallel
Strand 5	B	119	125	anti-parallel
Strand 6	B	107	109	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	87	89	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	60	63	anti-parallel
Strand 3	C	70	73	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	171	173	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	183	191	anti-parallel
Strand 4	C	128	135	parallel
Strand 5	C	119	125	anti-parallel
Strand 6	C	107	109	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	78	82	anti-parallel
Strand 3	D	97	102	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	55	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	11	20	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	92	95	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	97	102	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	55	first strand
Strand 2	E	27	36	anti-parallel
Strand 3	E	11	20	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	92	95	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	85	91	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	43	first strand
Strand 2	F	23	31	anti-parallel
Strand 3	F	11	20	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	84	92	anti-parallel
Strand 3	G	141	150	anti-parallel
Strand 4	G	155	162	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	54	first strand
Strand 2	G	129	133	anti-parallel
Strand 3	G	97	99	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	193	first strand
Strand 2	G	225	227	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	29	first strand
Strand 2	H	87	89	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	57	first strand
Strand 2	H	60	63	anti-parallel
Strand 3	H	70	73	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	93	first strand
Strand 2	H	171	173	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	103	first strand
Strand 2	H	164	168	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	128	135	parallel
Strand 5	H	119	125	anti-parallel
Strand 6	H	107	109	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	114	first strand
Strand 2	H	117	120	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	87	89	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	57	first strand
Strand 2	I	60	63	anti-parallel
Strand 3	I	70	73	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	93	first strand
Strand 2	I	171	173	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	103	first strand
Strand 2	I	163	168	anti-parallel
Strand 3	I	183	191	anti-parallel
Strand 4	I	128	135	parallel
Strand 5	I	119	125	anti-parallel
Strand 6	I	107	109	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	8	first strand
Strand 2	J	78	82	anti-parallel
Strand 3	J	97	102	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	55	first strand
Strand 2	J	27	36	anti-parallel
Strand 3	J	11	20	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	89	first strand
Strand 2	J	92	95	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	8	first strand
Strand 2	K	78	82	anti-parallel
Strand 3	K	97	102	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	55	first strand
Strand 2	K	27	36	anti-parallel
Strand 3	K	11	20	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	89	first strand
Strand 2	K	92	95	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	85	91	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	43	first strand
Strand 2	L	23	31	anti-parallel
Strand 3	L	11	20	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RO0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RO0