Analysis of interatomic Contacts of Structural Units in PDB entry:
6ROH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ROH entry

There are 3 chains in PDB entry 6ROH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 182SER 559
A
 LYS 561ALA 1309
C
 SER 20PHE 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6ROH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 223Right-handed alpha
Helix 2
AA2
A
225 237Right-handed alpha
Helix 3
AA3
A
248 270Right-handed alpha
Helix 4
AA4
A
270 275Right-handed alpha
Helix 5
AA5
A
276 281Right-handed alpha
Helix 6
AA6
A
438 473Right-handed alpha
Helix 7
AA7
A
488 502Right-handed alpha
Helix 8
AA8
A
503 506Right-handed 310
Helix 9
AA9
A
510 526Right-handed alpha
Helix 10
AB1
A
544 552Right-handed 310
Helix 11
AB2
A
605 613Right-handed alpha
Helix 12
AB3
A
618 631Right-handed alpha
Helix 13
AB4
A
652 664Right-handed alpha
Helix 14
AB5
A
723 728Right-handed alpha
Helix 15
AB6
A
738 751Right-handed alpha
Helix 16
AB7
A
769 781Right-handed alpha
Helix 17
AB8
A
789 795Right-handed alpha
Helix 18
AB9
A
816 827Right-handed alpha
Helix 19
AC1
A
838 849Right-handed alpha
Helix 20
AC2
A
865 881Right-handed alpha
Helix 21
AC3
A
889 891Right-handed 310
Helix 22
AC4
A
899 905Right-handed alpha
Helix 23
AC5
A
910 919Right-handed alpha
Helix 24
AC6
A
932 943Right-handed alpha
Helix 25
AC7
A
955 958Right-handed 310
Helix 26
AC8
A
959 964Right-handed alpha
Helix 27
AC9
A
978 983Right-handed alpha
Helix 28
AD1
A
989 991Right-handed 310
Helix 29
AD2
A
992 999Right-handed alpha
Helix 30
AD3
A
999 1019Right-handed alpha
Helix 31
AD4
A
1019 1024Right-handed alpha
Helix 32
AD5
A
1024 1029Right-handed alpha
Helix 33
AD6
A
1030 1032Right-handed 310
Helix 34
AD7
A
1046 1052Right-handed alpha
Helix 35
AD8
A
1055 1065Right-handed alpha
Helix 36
AD9
A
1069 1076Right-handed alpha
Helix 37
AE1
A
1077 1079Right-handed 310
Helix 38
AE2
A
1080 1085Right-handed alpha
Helix 39
AE3
A
1094 1115Right-handed alpha
Helix 40
AE4
A
1130 1154Right-handed alpha
Helix 41
AE5
A
1168 1180Right-handed alpha
Helix 42
AE6
A
1181 1187Right-handed 310
Helix 43
AE7
A
1194 1201Right-handed alpha
Helix 44
AE8
A
1202 1209Right-handed alpha
Helix 45
AE9
A
1211 1217Right-handed alpha
Helix 46
AF1
A
1217 1230Right-handed alpha
Helix 47
AF2
A
1253 1258Right-handed alpha
Helix 48
AF3
A
1259 1263Right-handed 310
Helix 49
AF4
A
1280 1284Right-handed 310
Helix 50
AF5
C
45 56Right-handed alpha
Helix 51
AF6
C
56 61Right-handed alpha
Helix 52
AF7
C
63 68Right-handed alpha
Helix 53
AF8
C
93 95Right-handed 310
Helix 54
AF9
C
150 155Right-handed alpha
Helix 55
AG1
C
158 164Right-handed alpha
Helix 56
AG2
C
191 196Right-handed alpha
Helix 57
AG3
C
226 231Right-handed alpha
Helix 58
AG4
C
266 274Right-handed alpha
Helix 59
AG5
C
330 346Right-handed alpha
Helix 60
AG6
C
349 356Right-handed alpha
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There are 12 sheets in PDB entry 6ROH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
385 388anti-parallel
Strand 4
A
392 394anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
308 309anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
406 408anti-parallel
Strand 3
A
331 335anti-parallel
Strand 4
A
345 349anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
319 321anti-parallel
Strand 3
A
416 419anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
985 987anti-parallel
Strand 3
A
967 971parallel
Strand 4
A
948 953parallel
Strand 5
A
554 559parallel
Strand 6
A
830 835parallel
Strand 7
A
923 927parallel
Strand 8
A
893 898parallel
Strand 9
A
857 861parallel
Strand 10
A
1266 1268anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 583first strand
Strand 2
A
566 577anti-parallel
Strand 3
A
802 813anti-parallel
Strand 4
A
755 762anti-parallel
Strand 5
A
716 722anti-parallel
Strand 6
A
704 710anti-parallel
Strand 7
A
687 696anti-parallel
Strand 8
A
676 680anti-parallel
Strand 9
A
668 672anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 640first strand
Strand 2
A
646 649anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
72 76anti-parallel
Strand 3
C
316 318anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
110 113anti-parallel
Strand 3
C
122 129anti-parallel
Strand 4
C
296 303anti-parallel
Strand 5
C
201 202anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
110 113anti-parallel
Strand 3
C
122 129anti-parallel
Strand 4
C
296 303anti-parallel
Strand 5
C
205 208anti-parallel
Strand 6
C
215 216anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 143first strand
Strand 2
C
281 288anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 187first strand
Strand 2
C
241 242parallel
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