Analysis of interatomic Contacts of Structural Units in PDB entry:
6ROI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ROI entry

There are 3 chains in PDB entry 6ROI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 182SER 559
A
 LYS 561ALA 1309
C
 SER 20PRO 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6ROI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 195Right-handed 310
Helix 2
AA2
A
213 223Right-handed alpha
Helix 3
AA3
A
224 237Right-handed alpha
Helix 4
AA4
A
248 253Right-handed alpha
Helix 5
AA5
A
253 271Right-handed alpha
Helix 6
AA6
A
273 281Right-handed alpha
Helix 7
AA7
A
396 398Right-handed 310
Helix 8
AA8
A
440 445Right-handed alpha
Helix 9
AA9
A
448 458Right-handed alpha
Helix 10
AB1
A
461 473Right-handed alpha
Helix 11
AB2
A
477 481Right-handed 310
Helix 12
AB3
A
496 502Right-handed alpha
Helix 13
AB4
A
514 526Right-handed alpha
Helix 14
AB5
A
527 530Right-handed 310
Helix 15
AB6
A
548 553Right-handed 310
Helix 16
AB7
A
604 614Right-handed alpha
Helix 17
AB8
A
619 628Right-handed alpha
Helix 18
AB9
A
628 633Right-handed alpha
Helix 19
AC1
A
654 663Right-handed alpha
Helix 20
AC2
A
664 666Right-handed 310
Helix 21
AC3
A
723 728Right-handed alpha
Helix 22
AC4
A
738 750Right-handed alpha
Helix 23
AC5
A
765 779Right-handed alpha
Helix 24
AC6
A
785 796Right-handed alpha
Helix 25
AC7
A
816 827Right-handed alpha
Helix 26
AC8
A
838 849Right-handed alpha
Helix 27
AC9
A
865 882Right-handed alpha
Helix 28
AD1
A
886 891Right-handed alpha
Helix 29
AD2
A
899 903Right-handed alpha
Helix 30
AD3
A
910 919Right-handed alpha
Helix 31
AD4
A
932 937Right-handed alpha
Helix 32
AD5
A
937 942Right-handed alpha
Helix 33
AD6
A
958 963Right-handed alpha
Helix 34
AD7
A
977 982Right-handed alpha
Helix 35
AD8
A
989 991Right-handed 310
Helix 36
AD9
A
992 1007Right-handed alpha
Helix 37
AE1
A
1007 1012Right-handed alpha
Helix 38
AE2
A
1017 1022Right-handed alpha
Helix 39
AE3
A
1042 1048Right-handed alpha
Helix 40
AE4
A
1055 1064Right-handed alpha
Helix 41
AE5
A
1069 1076Right-handed alpha
Helix 42
AE6
A
1077 1079Right-handed 310
Helix 43
AE7
A
1080 1086Right-handed alpha
Helix 44
AE8
A
1090 1104Right-handed alpha
Helix 45
AE9
A
1110 1115Right-handed alpha
Helix 46
AF1
A
1131 1154Right-handed alpha
Helix 47
AF2
A
1160 1165Right-handed alpha
Helix 48
AF3
A
1167 1182Right-handed alpha
Helix 49
AF4
A
1183 1187Right-handed 310
Helix 50
AF5
A
1194 1201Right-handed alpha
Helix 51
AF6
A
1202 1230Right-handed alpha
Helix 52
AF7
A
1235 1245Right-handed alpha
Helix 53
AF8
C
56 61Right-handed alpha
Helix 54
AF9
C
93 95Right-handed 310
Helix 55
AG1
C
150 155Right-handed alpha
Helix 56
AG2
C
159 164Right-handed alpha
Helix 57
AG3
C
191 196Right-handed alpha
Helix 58
AG4
C
226 231Right-handed alpha
Helix 59
AG5
C
237 239Right-handed 310
Helix 60
AG6
C
266 274Right-handed alpha
Helix 61
AG7
C
330 346Right-handed alpha
Helix 62
AG8
C
348 354Right-handed alpha
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There are 12 sheets in PDB entry 6ROI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
384 387anti-parallel
Strand 4
A
392 394anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
413 417anti-parallel
Strand 5
A
320 325anti-parallel
Strand 6
A
400 401anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
406 408anti-parallel
Strand 3
A
333 335anti-parallel
Strand 4
A
345 347anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
538 539anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
985 987anti-parallel
Strand 3
A
967 971parallel
Strand 4
A
950 953parallel
Strand 5
A
556 558parallel
Strand 6
A
830 834parallel
Strand 7
A
923 927parallel
Strand 8
A
893 898parallel
Strand 9
A
857 861parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 583first strand
Strand 2
A
566 577anti-parallel
Strand 3
A
802 813anti-parallel
Strand 4
A
755 763anti-parallel
Strand 5
A
716 722anti-parallel
Strand 6
A
704 710anti-parallel
Strand 7
A
690 695anti-parallel
Strand 8
A
676 677anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 640first strand
Strand 2
A
646 649anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
72 75anti-parallel
Strand 3
C
317 318anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
110 113anti-parallel
Strand 3
C
123 129anti-parallel
Strand 4
C
296 302anti-parallel
Strand 5
C
205 208anti-parallel
Strand 6
C
215 216anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
284 288anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
280 281anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 187first strand
Strand 2
C
241 242parallel
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