Analysis of interatomic Contacts of Structural Units in PDB entry:
6ROJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ROJ entry

There are 3 chains in PDB entry 6ROJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 182SER 559
A
 LYS 561ASN 1245
C
 THR 19PRO 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6ROJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 196Right-handed 310
Helix 2
AA2
A
212 222Right-handed alpha
Helix 3
AA3
A
224 235Right-handed alpha
Helix 4
AA4
A
250 281Right-handed alpha
Helix 5
AA5
A
300 302Right-handed 310
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
396 398Right-handed 310
Helix 8
AA8
A
420 424Right-handed 310
Helix 9
AA9
A
438 473Right-handed alpha
Helix 10
AB1
A
487 503Right-handed alpha
Helix 11
AB2
A
504 506Right-handed 310
Helix 12
AB3
A
509 514Right-handed alpha
Helix 13
AB4
A
514 526Right-handed alpha
Helix 14
AB5
A
528 532Right-handed 310
Helix 15
AB6
A
544 548Right-handed 310
Helix 16
AB7
A
604 614Right-handed alpha
Helix 17
AB8
A
619 633Right-handed alpha
Helix 18
AB9
A
652 666Right-handed alpha
Helix 19
AC1
A
723 728Right-handed alpha
Helix 20
AC2
A
729 731Right-handed 310
Helix 21
AC3
A
738 751Right-handed alpha
Helix 22
AC4
A
765 782Right-handed alpha
Helix 23
AC5
A
788 795Right-handed alpha
Helix 24
AC6
A
816 827Right-handed alpha
Helix 25
AC7
A
838 849Right-handed alpha
Helix 26
AC8
A
865 882Right-handed alpha
Helix 27
AC9
A
889 891Right-handed 310
Helix 28
AD1
A
901 906Right-handed alpha
Helix 29
AD2
A
910 919Right-handed alpha
Helix 30
AD3
A
932 945Right-handed alpha
Helix 31
AD4
A
955 957Right-handed 310
Helix 32
AD5
A
958 964Right-handed alpha
Helix 33
AD6
A
977 982Right-handed alpha
Helix 34
AD7
A
989 991Right-handed 310
Helix 35
AD8
A
992 999Right-handed alpha
Helix 36
AD9
A
999 1024Right-handed alpha
Helix 37
AE1
A
1027 1032Right-handed 310
Helix 38
AE2
A
1042 1048Right-handed alpha
Helix 39
AE3
A
1055 1065Right-handed alpha
Helix 40
AE4
A
1069 1074Right-handed alpha
Helix 41
AE5
A
1076 1079Right-handed 310
Helix 42
AE6
A
1080 1086Right-handed alpha
Helix 43
AE7
A
1090 1116Right-handed alpha
Helix 44
AE8
A
1130 1154Right-handed alpha
Helix 45
AE9
A
1165 1183Right-handed alpha
Helix 46
AF1
A
1184 1187Right-handed 310
Helix 47
AF2
A
1189 1193Right-handed 310
Helix 48
AF3
A
1194 1200Right-handed alpha
Helix 49
AF4
A
1204 1217Right-handed alpha
Helix 50
AF5
A
1217 1231Right-handed alpha
Helix 51
AF6
A
1233 1245Right-handed alpha
Helix 52
AF7
C
41 69Right-handed alpha
Helix 53
AF8
C
79 84Right-handed alpha
Helix 54
AF9
C
150 155Right-handed alpha
Helix 55
AG1
C
158 164Right-handed alpha
Helix 56
AG2
C
226 231Right-handed alpha
Helix 57
AG3
C
244 248Right-handed 310
Helix 58
AG4
C
266 274Right-handed alpha
Helix 59
AG5
C
330 357Right-handed alpha
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There are 12 sheets in PDB entry 6ROJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
385 387anti-parallel
Strand 4
A
392 394anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
413 419anti-parallel
Strand 5
A
319 325anti-parallel
Strand 6
A
400 401anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
406 408anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
985 987anti-parallel
Strand 3
A
967 971parallel
Strand 4
A
949 953parallel
Strand 5
A
556 559parallel
Strand 6
A
830 834parallel
Strand 7
A
923 926parallel
Strand 8
A
893 897parallel
Strand 9
A
857 861parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 577first strand
Strand 2
A
802 813anti-parallel
Strand 3
A
755 764anti-parallel
Strand 4
A
716 722anti-parallel
Strand 5
A
704 710anti-parallel
Strand 6
A
691 696anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 639first strand
Strand 2
A
647 649anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 673first strand
Strand 2
A
676 681anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
72 75anti-parallel
Strand 3
C
316 320anti-parallel
Strand 4
C
137 144anti-parallel
Strand 5
C
280 288anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
110 111anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 115first strand
Strand 2
C
121 125anti-parallel
Strand 3
C
296 303anti-parallel
Strand 4
C
201 202anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
296 303anti-parallel
Strand 3
C
205 209anti-parallel
Strand 4
C
215 216anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 182first strand
Strand 2
C
185 187anti-parallel
Strand 3
C
241 242parallel
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