Analysis of interatomic Contacts of Structural Units in PDB entry:
6ROP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ROP entry

There are 4 chains in PDB entry 6ROP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ASN 852
B	SER 1	ASN 852
C	SER 1	ASN 852
D	SER 1	ASN 852

There are167 helices in PDB entry 6ROP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	28	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	68	73	Right-handed alpha
Helix 4	AA4	A	76	93	Right-handed alpha
Helix 5	AA5	A	96	101	Right-handed 310
Helix 6	AA6	A	114	121	Right-handed alpha
Helix 7	AA7	A	129	136	Right-handed alpha
Helix 8	AA8	A	138	149	Right-handed alpha
Helix 9	AA9	A	159	161	Right-handed 310
Helix 10	AB1	A	162	177	Right-handed alpha
Helix 11	AB2	A	193	203	Right-handed alpha
Helix 12	AB3	A	237	239	Right-handed 310
Helix 13	AB4	A	265	277	Right-handed alpha
Helix 14	AB5	A	278	281	Right-handed 310
Helix 15	AB6	A	283	285	Right-handed 310
Helix 16	AB7	A	299	312	Right-handed alpha
Helix 17	AB8	A	313	316	Right-handed 310
Helix 18	AB9	A	325	330	Right-handed alpha
Helix 19	AC1	A	332	334	Right-handed 310
Helix 20	AC2	A	335	351	Right-handed alpha
Helix 21	AC3	A	366	371	Right-handed alpha
Helix 22	AC4	A	430	444	Right-handed alpha
Helix 23	AC5	A	447	459	Right-handed alpha
Helix 24	AC6	A	508	512	Right-handed 310
Helix 25	AC7	A	513	528	Right-handed alpha
Helix 26	AC8	A	533	539	Right-handed alpha
Helix 27	AC9	A	544	547	Right-handed 310
Helix 28	AD1	A	548	570	Right-handed alpha
Helix 29	AD2	A	582	591	Right-handed alpha
Helix 30	AD3	A	595	613	Right-handed alpha
Helix 31	AD4	A	626	633	Right-handed alpha
Helix 32	AD5	A	654	659	Right-handed alpha
Helix 33	AD6	A	662	667	Right-handed alpha
Helix 34	AD7	A	684	689	Right-handed 310
Helix 35	AD8	A	690	700	Right-handed alpha
Helix 36	AD9	A	718	722	Right-handed 310
Helix 37	AE1	A	731	741	Right-handed alpha
Helix 38	AE2	A	745	750	Right-handed alpha
Helix 39	AE3	A	767	775	Right-handed alpha
Helix 40	AE4	A	791	805	Right-handed alpha
Helix 41	AE5	A	811	816	Right-handed 310
Helix 42	AE6	A	830	834	Right-handed 310
Helix 43	AE7	A	846	850	Right-handed 310
Helix 44	AE8	B	18	28	Right-handed alpha
Helix 45	AE9	B	43	47	Right-handed 310
Helix 46	AF1	B	68	74	Right-handed alpha
Helix 47	AF2	B	76	93	Right-handed alpha
Helix 48	AF3	B	96	101	Right-handed 310
Helix 49	AF4	B	114	121	Right-handed alpha
Helix 50	AF5	B	129	136	Right-handed alpha
Helix 51	AF6	B	138	149	Right-handed alpha
Helix 52	AF7	B	159	161	Right-handed 310
Helix 53	AF8	B	162	177	Right-handed alpha
Helix 54	AF9	B	193	203	Right-handed alpha
Helix 55	AG1	B	237	239	Right-handed 310
Helix 56	AG2	B	265	277	Right-handed alpha
Helix 57	AG3	B	278	281	Right-handed 310
Helix 58	AG4	B	283	285	Right-handed 310
Helix 59	AG5	B	299	312	Right-handed alpha
Helix 60	AG6	B	313	316	Right-handed 310
Helix 61	AG7	B	324	330	Right-handed alpha
Helix 62	AG8	B	332	334	Right-handed 310
Helix 63	AG9	B	335	351	Right-handed alpha
Helix 64	AH1	B	366	372	Right-handed alpha
Helix 65	AH2	B	430	444	Right-handed alpha
Helix 66	AH3	B	447	459	Right-handed alpha
Helix 67	AH4	B	513	524	Right-handed alpha
Helix 68	AH5	B	533	538	Right-handed alpha
Helix 69	AH6	B	550	570	Right-handed alpha
Helix 70	AH7	B	580	582	Right-handed 310
Helix 71	AH8	B	583	592	Right-handed alpha
Helix 72	AH9	B	595	612	Right-handed alpha
Helix 73	AI1	B	684	688	Right-handed 310
Helix 74	AI2	B	690	699	Right-handed alpha
Helix 75	AI3	B	718	722	Right-handed 310
Helix 76	AI4	B	733	741	Right-handed alpha
Helix 77	AI5	B	745	750	Right-handed alpha
Helix 78	AI6	B	767	775	Right-handed alpha
Helix 79	AI7	B	791	805	Right-handed alpha
Helix 80	AI8	B	811	816	Right-handed 310
Helix 81	AI9	B	830	834	Right-handed 310
Helix 82	AJ1	B	846	850	Right-handed 310
Helix 83	AJ2	C	18	28	Right-handed alpha
Helix 84	AJ3	C	43	47	Right-handed 310
Helix 85	AJ4	C	61	66	Right-handed 310
Helix 86	AJ5	C	68	73	Right-handed alpha
Helix 87	AJ6	C	76	93	Right-handed alpha
Helix 88	AJ7	C	96	101	Right-handed 310
Helix 89	AJ8	C	114	121	Right-handed alpha
Helix 90	AJ9	C	129	136	Right-handed alpha
Helix 91	AK1	C	138	149	Right-handed alpha
Helix 92	AK2	C	159	161	Right-handed 310
Helix 93	AK3	C	162	177	Right-handed alpha
Helix 94	AK4	C	193	203	Right-handed alpha
Helix 95	AK5	C	237	239	Right-handed 310
Helix 96	AK6	C	265	277	Right-handed alpha
Helix 97	AK7	C	278	281	Right-handed 310
Helix 98	AK8	C	283	285	Right-handed 310
Helix 99	AK9	C	299	312	Right-handed alpha
Helix 100	AL1	C	313	316	Right-handed 310
Helix 101	AL2	C	325	330	Right-handed alpha
Helix 102	AL3	C	332	334	Right-handed 310
Helix 103	AL4	C	335	351	Right-handed alpha
Helix 104	AL5	C	366	371	Right-handed alpha
Helix 105	AL6	C	430	444	Right-handed alpha
Helix 106	AL7	C	447	459	Right-handed alpha
Helix 107	AL8	C	509	512	Right-handed 310
Helix 108	AL9	C	513	524	Right-handed alpha
Helix 109	AM1	C	534	539	Right-handed alpha
Helix 110	AM2	C	553	570	Right-handed alpha
Helix 111	AM3	C	580	584	Right-handed 310
Helix 112	AM4	C	585	592	Right-handed alpha
Helix 113	AM5	C	595	600	Right-handed alpha
Helix 114	AM6	C	600	613	Right-handed alpha
Helix 115	AM7	C	654	660	Right-handed alpha
Helix 116	AM8	C	684	689	Right-handed 310
Helix 117	AM9	C	690	702	Right-handed alpha
Helix 118	AN1	C	718	722	Right-handed 310
Helix 119	AN2	C	731	741	Right-handed alpha
Helix 120	AN3	C	745	750	Right-handed alpha
Helix 121	AN4	C	768	775	Right-handed alpha
Helix 122	AN5	C	791	805	Right-handed alpha
Helix 123	AN6	C	811	816	Right-handed 310
Helix 124	AN7	C	830	834	Right-handed 310
Helix 125	AN8	C	846	850	Right-handed 310
Helix 126	AN9	D	18	28	Right-handed alpha
Helix 127	AO1	D	43	47	Right-handed 310
Helix 128	AO2	D	68	73	Right-handed alpha
Helix 129	AO3	D	76	93	Right-handed alpha
Helix 130	AO4	D	96	100	Right-handed 310
Helix 131	AO5	D	114	121	Right-handed alpha
Helix 132	AO6	D	129	136	Right-handed alpha
Helix 133	AO7	D	138	149	Right-handed alpha
Helix 134	AO8	D	159	161	Right-handed 310
Helix 135	AO9	D	162	177	Right-handed alpha
Helix 136	AP1	D	193	203	Right-handed alpha
Helix 137	AP2	D	237	239	Right-handed 310
Helix 138	AP3	D	265	277	Right-handed alpha
Helix 139	AP4	D	278	281	Right-handed 310
Helix 140	AP5	D	283	285	Right-handed 310
Helix 141	AP6	D	299	312	Right-handed alpha
Helix 142	AP7	D	313	316	Right-handed 310
Helix 143	AP8	D	325	330	Right-handed alpha
Helix 144	AP9	D	332	334	Right-handed 310
Helix 145	AQ1	D	335	351	Right-handed alpha
Helix 146	AQ2	D	366	371	Right-handed alpha
Helix 147	AQ3	D	415	419	Right-handed 310
Helix 148	AQ4	D	430	444	Right-handed alpha
Helix 149	AQ5	D	447	457	Right-handed alpha
Helix 150	AQ6	D	509	512	Right-handed 310
Helix 151	AQ7	D	513	527	Right-handed alpha
Helix 152	AQ8	D	533	540	Right-handed alpha
Helix 153	AQ9	D	548	570	Right-handed alpha
Helix 154	AR1	D	582	591	Right-handed alpha
Helix 155	AR2	D	595	613	Right-handed alpha
Helix 156	AR3	D	627	632	Right-handed alpha
Helix 157	AR4	D	655	664	Right-handed alpha
Helix 158	AR5	D	685	690	Right-handed alpha
Helix 159	AR6	D	690	702	Right-handed alpha
Helix 160	AR7	D	718	724	Right-handed 310
Helix 161	AR8	D	733	738	Right-handed alpha
Helix 162	AR9	D	745	750	Right-handed alpha
Helix 163	AS1	D	767	775	Right-handed alpha
Helix 164	AS2	D	791	805	Right-handed alpha
Helix 165	AS3	D	811	816	Right-handed 310
Helix 166	AS4	D	830	834	Right-handed 310
Helix 167	AS5	D	846	850	Right-handed 310

There are 19 sheets in PDB entry 6ROP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	320	323	parallel
Strand 3	A	287	291	parallel
Strand 4	A	387	393	parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	244	253	anti-parallel
Strand 7	A	4	12	anti-parallel
Strand 8	A	227	235	anti-parallel
Strand 9	A	182	189	anti-parallel
Strand 10	A	106	110	parallel
Strand 11	A	154	158	parallel
Strand 12	B	154	158	anti-parallel
Strand 13	B	106	110	parallel
Strand 14	B	182	189	parallel
Strand 15	B	227	235	anti-parallel
Strand 16	B	4	12	anti-parallel
Strand 17	B	244	253	anti-parallel
Strand 18	B	398	406	anti-parallel
Strand 19	B	387	393	anti-parallel
Strand 20	B	287	291	parallel
Strand 21	B	320	323	parallel
Strand 22	B	374	376	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	51	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	381	382	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	428	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	480	484	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	576	579	parallel
Strand 3	A	492	496	parallel
Strand 4	A	757	761	parallel
Strand 5	A	780	783	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	619	623	anti-parallel
Strand 3	A	649	653	anti-parallel
Strand 4	A	639	643	anti-parallel
Strand 5	A	743	744	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	381	382	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	428	first strand
Strand 2	B	467	473	anti-parallel
Strand 3	B	480	484	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	578	first strand
Strand 2	B	492	495	parallel
Strand 3	B	757	760	parallel
Strand 4	B	780	783	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	639	643	anti-parallel
Strand 3	B	743	744	parallel

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There are 22 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	320	323	parallel
Strand 3	C	287	291	parallel
Strand 4	C	387	393	parallel
Strand 5	C	398	406	anti-parallel
Strand 6	C	244	253	anti-parallel
Strand 7	C	4	12	anti-parallel
Strand 8	C	227	235	anti-parallel
Strand 9	C	182	189	anti-parallel
Strand 10	C	106	110	parallel
Strand 11	C	154	158	parallel
Strand 12	D	154	158	anti-parallel
Strand 13	D	106	110	parallel
Strand 14	D	182	189	parallel
Strand 15	D	227	235	anti-parallel
Strand 16	D	4	12	anti-parallel
Strand 17	D	244	253	anti-parallel
Strand 18	D	398	406	anti-parallel
Strand 19	D	387	393	anti-parallel
Strand 20	D	287	291	parallel
Strand 21	D	320	323	parallel
Strand 22	D	374	376	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	381	382	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	428	first strand
Strand 2	C	467	473	anti-parallel
Strand 3	C	480	484	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	576	578	parallel
Strand 3	C	492	496	parallel
Strand 4	C	757	761	parallel
Strand 5	C	780	783	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	620	623	first strand
Strand 2	C	648	652	anti-parallel
Strand 3	C	639	645	anti-parallel
Strand 4	C	743	744	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	381	382	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	428	first strand
Strand 2	D	467	473	anti-parallel
Strand 3	D	480	484	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	713	first strand
Strand 2	D	576	579	parallel
Strand 3	D	492	496	parallel
Strand 4	D	757	761	parallel
Strand 5	D	780	782	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	674	675	first strand
Strand 2	D	618	623	anti-parallel
Strand 3	D	648	654	anti-parallel
Strand 4	D	639	645	anti-parallel
Strand 5	D	743	744	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ROP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ROP