Analysis of interatomic Contacts of Structural Units in PDB entry:
6RPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RPC entry

There is 1 chain in PDB entry 6RPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 31SER 1044
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6RPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 52Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
98 106Right-handed alpha
Helix 4
AA4
A
106 121Right-handed alpha
Helix 5
AA5
A
130 141Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
174 194Right-handed alpha
Helix 8
AA8
A
210 218Right-handed alpha
Helix 9
AA9
A
230 240Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
284 290Right-handed 310
Helix 13
AB4
A
310 327Right-handed alpha
Helix 14
AB5
A
346 367Right-handed alpha
Helix 15
AB6
A
368 370Right-handed 310
Helix 16
AB7
A
378 392Right-handed alpha
Helix 17
AB8
A
416 420Right-handed 310
Helix 18
AB9
A
422 445Right-handed alpha
Helix 19
AC1
A
449 452Right-handed 310
Helix 20
AC2
A
453 469Right-handed alpha
Helix 21
AC3
A
479 510Right-handed alpha
Helix 22
AC4
A
823 828Right-handed 310
Helix 23
AC5
A
915 927Right-handed alpha
Helix 24
AC6
A
998 1002Right-handed 310
Helix 25
AC7
A
1024 1027Right-handed 310
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There are 10 sheets in PDB entry 6RPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
399 401parallel
Strand 3
A
244 247parallel
Strand 4
A
259 263anti-parallel
Strand 5
A
223 226parallel
Strand 6
A
199 202parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 338first strand
Strand 2
A
81 87parallel
Strand 3
A
372 376parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
158 160parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 527first strand
Strand 2
A
930 934anti-parallel
Strand 3
A
552 559anti-parallel
Strand 4
A
628 636anti-parallel
Strand 5
A
578 582anti-parallel
Strand 6
A
587 588anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 527first strand
Strand 2
A
930 934anti-parallel
Strand 3
A
552 559anti-parallel
Strand 4
A
628 636anti-parallel
Strand 5
A
945 946anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 543first strand
Strand 2
A
565 573parallel
Strand 3
A
607 624anti-parallel
Strand 4
A
590 600anti-parallel
Strand 5
A
644 646parallel
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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 671first strand
Strand 2
A
648 652parallel
Strand 3
A
745 749anti-parallel
Strand 4
A
754 760anti-parallel
Strand 5
A
763 769anti-parallel
Strand 6
A
775 780anti-parallel
Strand 7
A
888 898anti-parallel
Strand 8
A
842 848anti-parallel
Strand 9
A
834 838anti-parallel
Strand 10
A
803 808anti-parallel
Strand 11
A
812 817anti-parallel
Strand 12
A
911 912anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
685 688anti-parallel
Strand 3
A
694 698anti-parallel
Strand 4
A
706 715anti-parallel
Strand 5
A
736 737anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
685 688anti-parallel
Strand 3
A
694 698anti-parallel
Strand 4
A
706 715anti-parallel
Strand 5
A
788 796anti-parallel
Strand 6
A
861 869anti-parallel
Strand 7
A
852 855anti-parallel
Strand 8
A
829 831anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 964first strand
Strand 2
A
973 981anti-parallel
Strand 3
A
1036 1043anti-parallel
Strand 4
A
1006 1012anti-parallel
Strand 5
A
1019 1022anti-parallel
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