Analysis of interatomic Contacts of Structural Units in PDB entry:
6RPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RPR entry

There are 4 chains in PDB entry 6RPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 430ARG 545
D
 THR 3LEU 89
E
 THR 3LEU 89
G
 ASP 2GLN 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6RPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
501 503Right-handed 310
Helix 2
AA2
D
4 12Right-handed alpha
Helix 3
AA3
D
19 23Right-handed 310
Helix 4
AA4
D
27 37Right-handed alpha
Helix 5
AA5
D
41 52Right-handed alpha
Helix 6
AA6
D
55 68Right-handed alpha
Helix 7
AA7
D
70 89Right-handed alpha
Helix 8
AA8
E
4 12Right-handed alpha
Helix 9
AA9
E
19 23Right-handed 310
Helix 10
AB1
E
27 37Right-handed alpha
Helix 11
AB2
E
41 52Right-handed alpha
Helix 12
AB3
E
55 68Right-handed alpha
Helix 13
AB4
E
70 89Right-handed alpha
Helix 14
AB5
G
8 19Right-handed alpha
Helix 15
AB6
G
30 43Right-handed alpha
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There are 3 sheets in PDB entry 6RPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 436first strand
Strand 2
B
537 544anti-parallel
Strand 3
B
525 531anti-parallel
Strand 4
B
468 473anti-parallel
Strand 5
B
479 482anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 445first strand
Strand 2
B
451 456anti-parallel
Strand 3
B
494 499anti-parallel
Strand 4
B
511 514parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 463first strand
Strand 2
B
488 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il