Analysis of interatomic Contacts of Structural Units in PDB entry:
6RPS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RPS entry

There are 6 chains in PDB entry 6RPS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	GLN 262
B	MET 3	GLN 262
M	VAL 0	GLU 213
N	GLN 1	SER 215
L	VAL 0	GLU 213
H	GLN 1	SER 215

There are 30 helices in PDB entry 6RPS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	34	36	Right-handed 310
Helix 4	AA4	A	130	135	Right-handed alpha
Helix 5	AA5	A	154	162	Right-handed alpha
Helix 6	AA6	A	163	167	Right-handed 310
Helix 7	AA7	A	180	185	Right-handed 310
Helix 8	AA8	A	219	230	Right-handed alpha
Helix 9	AA9	B	15	20	Right-handed alpha
Helix 10	AB1	B	21	25	Right-handed 310
Helix 11	AB2	B	34	36	Right-handed 310
Helix 12	AB3	B	130	135	Right-handed alpha
Helix 13	AB4	B	154	162	Right-handed alpha
Helix 14	AB5	B	163	167	Right-handed 310
Helix 15	AB6	B	180	185	Right-handed 310
Helix 16	AB7	B	220	228	Right-handed alpha
Helix 17	AB8	M	79	83	Right-handed 310
Helix 18	AB9	M	121	128	Right-handed alpha
Helix 19	AC1	M	183	187	Right-handed alpha
Helix 20	AC2	N	83	87	Right-handed 310
Helix 21	AC3	N	156	158	Right-handed 310
Helix 22	AC4	N	187	189	Right-handed 310
Helix 23	AC5	N	201	204	Right-handed 310
Helix 24	AC6	L	79	83	Right-handed 310
Helix 25	AC7	L	121	128	Right-handed alpha
Helix 26	AC8	L	183	187	Right-handed alpha
Helix 27	AC9	H	83	87	Right-handed 310
Helix 28	AD1	H	156	158	Right-handed 310
Helix 29	AD2	H	187	189	Right-handed 310
Helix 30	AD3	H	201	204	Right-handed 310

There are 28 sheets in PDB entry 6RPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	108	109	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	256	258	parallel
Strand 3	A	191	196	anti-parallel
Strand 4	A	207	212	anti-parallel
Strand 5	A	141	150	parallel
Strand 6	A	116	124	anti-parallel
Strand 7	A	88	97	anti-parallel
Strand 8	A	66	69	anti-parallel
Strand 9	A	56	61	anti-parallel
Strand 10	A	173	177	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	78	80	anti-parallel
Strand 3	A	88	97	anti-parallel
Strand 4	A	116	124	anti-parallel
Strand 5	A	141	150	anti-parallel
Strand 6	A	216	218	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	108	109	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	256	258	parallel
Strand 3	B	191	196	anti-parallel
Strand 4	B	207	212	anti-parallel
Strand 5	B	141	151	parallel
Strand 6	B	116	124	anti-parallel
Strand 7	B	88	97	anti-parallel
Strand 8	B	66	69	anti-parallel
Strand 9	B	56	61	anti-parallel
Strand 10	B	173	177	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	78	80	anti-parallel
Strand 3	B	88	97	anti-parallel
Strand 4	B	116	124	anti-parallel
Strand 5	B	141	151	anti-parallel
Strand 6	B	216	219	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	154	first strand
Strand 2	M	144	150	anti-parallel
Strand 3	M	191	198	anti-parallel
Strand 4	M	205	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	77	82	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	107	111	parallel
Strand 3	N	88	97	anti-parallel
Strand 4	N	32	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	107	111	parallel
Strand 3	N	88	97	anti-parallel
Strand 4	N	102	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	120	124	first strand
Strand 2	N	135	145	anti-parallel
Strand 3	N	176	185	anti-parallel
Strand 4	N	163	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	120	124	first strand
Strand 2	N	135	145	anti-parallel
Strand 3	N	176	185	anti-parallel
Strand 4	N	169	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	151	154	first strand
Strand 2	N	194	200	anti-parallel
Strand 3	N	205	211	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	97	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	97	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RPS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RPS