Analysis of interatomic Contacts of Structural Units in PDB entry:
6RPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RPT entry

There are 6 chains in PDB entry 6RPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 MET 347SER 458
F
 VAL 2SER 87
A
 MET 347SER 459
B
 VAL 2SER 87
C
 MET 347SER 458
D
 VAL 2SER 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6RPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
443 447Right-handed 310
Helix 2
AA2
C
443 447Right-handed 310
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There are 18 sheets in PDB entry 6RPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
353 356first strand
Strand 2
E
369 376anti-parallel
Strand 3
E
417 422anti-parallel
Strand 4
F
60 61anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
362 363first strand
Strand 2
E
449 456parallel
Strand 3
E
428 437anti-parallel
Strand 4
E
387 396anti-parallel
Strand 5
E
401 403anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
362 363first strand
Strand 2
E
449 456parallel
Strand 3
E
428 437anti-parallel
Strand 4
E
387 396anti-parallel
Strand 5
E
407 410anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
51 55anti-parallel
Strand 3
F
42 46anti-parallel
Strand 4
F
33 35anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 17first strand
Strand 2
F
20 23anti-parallel
Strand 3
F
26 29anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
67 69first strand
Strand 2
F
82 84anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
417 422anti-parallel
Strand 4
B
60 61anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
449 456parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
387 396anti-parallel
Strand 5
A
401 403anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
449 456parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
387 396anti-parallel
Strand 5
A
407 410anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
42 46anti-parallel
Strand 4
B
33 35anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
20 23anti-parallel
Strand 3
B
26 29anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
82 84anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 356first strand
Strand 2
C
369 376anti-parallel
Strand 3
C
417 422anti-parallel
Strand 4
D
60 61anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
449 456parallel
Strand 3
C
428 437anti-parallel
Strand 4
C
387 396anti-parallel
Strand 5
C
401 403anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
449 456parallel
Strand 3
C
428 437anti-parallel
Strand 4
C
387 396anti-parallel
Strand 5
C
407 410anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
42 46anti-parallel
Strand 4
D
33 35anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
20 23anti-parallel
Strand 3
D
26 29anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 69first strand
Strand 2
D
82 84anti-parallel
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