Analysis of interatomic Contacts of Structural Units in PDB entry:
6RQG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RQG entry

There are 3 chains in PDB entry 6RQG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 43	ASP 415
B	ALA 43	ASP 415
C	ALA 43	ASP 415

There are 36 helices in PDB entry 6RQG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	79	Right-handed alpha
Helix 2	AA2	A	91	104	Right-handed alpha
Helix 3	AA3	A	122	131	Right-handed alpha
Helix 4	AA4	A	156	174	Right-handed alpha
Helix 5	AA5	A	182	193	Right-handed alpha
Helix 6	AA6	A	210	230	Right-handed alpha
Helix 7	AA7	A	248	251	Right-handed 310
Helix 8	AA8	A	252	268	Right-handed alpha
Helix 9	AA9	A	294	308	Right-handed alpha
Helix 10	AB1	A	323	332	Right-handed alpha
Helix 11	AB2	A	342	360	Right-handed alpha
Helix 12	AB3	A	365	377	Right-handed alpha
Helix 13	AB4	B	64	79	Right-handed alpha
Helix 14	AB5	B	91	104	Right-handed alpha
Helix 15	AB6	B	122	132	Right-handed alpha
Helix 16	AB7	B	156	174	Right-handed alpha
Helix 17	AB8	B	182	193	Right-handed alpha
Helix 18	AB9	B	210	230	Right-handed alpha
Helix 19	AC1	B	248	251	Right-handed 310
Helix 20	AC2	B	252	268	Right-handed alpha
Helix 21	AC3	B	294	308	Right-handed alpha
Helix 22	AC4	B	323	332	Right-handed alpha
Helix 23	AC5	B	342	361	Right-handed alpha
Helix 24	AC6	B	368	377	Right-handed alpha
Helix 25	AC7	C	64	79	Right-handed alpha
Helix 26	AC8	C	91	104	Right-handed alpha
Helix 27	AC9	C	129	133	Right-handed 310
Helix 28	AD1	C	156	174	Right-handed alpha
Helix 29	AD2	C	182	192	Right-handed alpha
Helix 30	AD3	C	210	230	Right-handed alpha
Helix 31	AD4	C	248	251	Right-handed 310
Helix 32	AD5	C	252	268	Right-handed alpha
Helix 33	AD6	C	294	308	Right-handed alpha
Helix 34	AD7	C	323	332	Right-handed alpha
Helix 35	AD8	C	347	361	Right-handed alpha
Helix 36	AD9	C	367	377	Right-handed alpha

There are 13 sheets in PDB entry 6RQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	55	60	parallel
Strand 3	A	112	114	parallel
Strand 4	A	136	139	parallel
Strand 5	A	151	155	parallel
Strand 6	A	398	402	parallel
Strand 7	A	383	385	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	199	203	parallel
Strand 3	A	285	291	parallel
Strand 4	A	275	276	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	199	203	parallel
Strand 3	A	285	291	parallel
Strand 4	A	316	317	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	405	407	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	395	396	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	55	60	parallel
Strand 3	B	112	114	parallel
Strand 4	B	136	139	parallel
Strand 5	B	151	155	parallel
Strand 6	B	398	402	parallel
Strand 7	B	383	385	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	199	203	parallel
Strand 3	B	285	291	parallel
Strand 4	B	275	276	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	199	203	parallel
Strand 3	B	285	291	parallel
Strand 4	B	316	317	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	405	407	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	55	60	parallel
Strand 3	C	112	114	parallel
Strand 4	C	136	139	parallel
Strand 5	C	151	155	parallel
Strand 6	C	398	402	parallel
Strand 7	C	383	385	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	199	203	parallel
Strand 3	C	285	291	parallel
Strand 4	C	275	276	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	199	203	parallel
Strand 3	C	285	291	parallel
Strand 4	C	316	317	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	405	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RQG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RQG