Analysis of interatomic Contacts of Structural Units in PDB entry:
6RQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RQJ entry

There are 5 chains in PDB entry 6RQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 680	CYS 1676
C	SER 22	CYS 168
D	CYS 14	ALA 59
B	GLU 20	LYS 670
E	ARG 5	PRO 86

There are 31 helices in PDB entry 6RQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	680	690	Right-handed alpha
Helix 2	AA2	A	695	704	Right-handed alpha
Helix 3	AA3	A	710	715	Right-handed alpha
Helix 4	AA4	A	716	718	Right-handed 310
Helix 5	AA5	A	720	737	Right-handed alpha
Helix 6	AA6	A	743	758	Right-handed alpha
Helix 7	AA7	A	984	992	Right-handed alpha
Helix 8	AA8	A	1009	1014	Right-handed alpha
Helix 9	AA9	A	1015	1029	Right-handed alpha
Helix 10	AB1	A	1030	1034	Right-handed 310
Helix 11	AB2	A	1039	1056	Right-handed alpha
Helix 12	AB3	A	1057	1060	Right-handed 310
Helix 13	AB4	A	1075	1090	Right-handed alpha
Helix 14	AB5	A	1096	1111	Right-handed alpha
Helix 15	AB6	A	1132	1156	Right-handed alpha
Helix 16	AB7	A	1162	1179	Right-handed alpha
Helix 17	AB8	A	1184	1197	Right-handed alpha
Helix 18	AB9	A	1202	1214	Right-handed alpha
Helix 19	AC1	A	1244	1261	Right-handed alpha
Helix 20	AC2	A	1267	1278	Right-handed alpha
Helix 21	AC3	A	1286	1302	Right-handed alpha
Helix 22	AC4	A	1435	1445	Right-handed alpha
Helix 23	AC5	A	1527	1532	Right-handed 310
Helix 24	AC6	A	1546	1553	Right-handed alpha
Helix 25	AC7	A	1657	1675	Right-handed alpha
Helix 26	AC8	C	33	40	Right-handed 310
Helix 27	AC9	C	141	156	Right-handed alpha
Helix 28	AD1	B	88	92	Right-handed 310
Helix 29	AD2	B	302	307	Right-handed alpha
Helix 30	AD3	B	492	496	Right-handed 310
Helix 31	AD4	B	641	650	Right-handed alpha

There are 34 sheets in PDB entry 6RQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	765	first strand
Strand 2	B	221	222	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	780	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	A	802	805	anti-parallel
Strand 4	A	808	811	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	789	first strand
Strand 2	B	587	593	anti-parallel
Strand 3	B	572	576	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	818	first strand
Strand 2	A	796	799	anti-parallel
Strand 3	B	604	606	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	827	first strand
Strand 2	A	843	847	anti-parallel
Strand 3	A	893	896	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	832	834	first strand
Strand 2	A	919	930	parallel
Strand 3	A	908	916	anti-parallel
Strand 4	A	853	859	anti-parallel
Strand 5	A	886	888	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	839	840	first strand
Strand 2	A	899	902	anti-parallel
Strand 3	A	865	867	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	936	944	first strand
Strand 2	A	1357	1365	anti-parallel
Strand 3	A	974	980	anti-parallel
Strand 4	A	1338	1339	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	959	first strand
Strand 2	A	1346	1350	anti-parallel
Strand 3	A	1310	1317	anti-parallel
Strand 4	A	1322	1329	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1227	first strand
Strand 2	A	1217	1219	anti-parallel
Strand 3	C	139	140	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1377	1384	first strand
Strand 2	A	1401	1408	anti-parallel
Strand 3	A	1475	1481	anti-parallel
Strand 4	A	1432	1434	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1461	1463	first strand
Strand 2	A	1422	1426	anti-parallel
Strand 3	A	1491	1497	anti-parallel
Strand 4	A	1504	1505	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1461	1463	first strand
Strand 2	A	1422	1426	anti-parallel
Strand 3	A	1491	1497	anti-parallel
Strand 4	A	1508	1509	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1625	1628	first strand
Strand 2	A	1633	1638	anti-parallel
Strand 3	A	1597	1603	parallel
Strand 4	A	1574	1587	anti-parallel
Strand 5	A	1559	1570	anti-parallel
Strand 6	A	1616	1621	anti-parallel
Strand 7	A	1644	1647	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	55	61	anti-parallel
Strand 3	C	70	77	anti-parallel
Strand 4	C	84	92	anti-parallel
Strand 5	C	95	100	anti-parallel
Strand 6	C	103	112	anti-parallel
Strand 7	C	118	123	anti-parallel
Strand 8	C	129	135	anti-parallel
Strand 9	C	43	48	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	20	23	anti-parallel
Strand 3	D	51	52	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	54	57	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	86	first strand
Strand 2	B	36	44	anti-parallel
Strand 3	B	22	28	anti-parallel
Strand 4	B	651	654	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	112	120	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	50	57	anti-parallel
Strand 5	B	67	68	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	112	120	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	50	57	anti-parallel
Strand 5	B	71	73	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	182	184	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	212	219	parallel
Strand 3	B	197	205	anti-parallel
Strand 4	B	159	161	anti-parallel
Strand 5	B	174	176	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	188	189	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	233	first strand
Strand 2	B	247	253	anti-parallel
Strand 3	B	296	300	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	262	272	anti-parallel
Strand 3	B	289	293	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	262	272	anti-parallel
Strand 3	B	322	331	anti-parallel
Strand 4	B	337	342	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	369	376	anti-parallel
Strand 3	B	417	422	anti-parallel
Strand 4	E	60	61	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	454	456	parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	387	396	anti-parallel
Strand 5	B	402	410	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	454	456	parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	449	451	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	481	489	anti-parallel
Strand 3	B	524	529	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	502	505	anti-parallel
Strand 3	B	537	546	anti-parallel
Strand 4	B	553	562	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	51	55	anti-parallel
Strand 3	E	42	46	anti-parallel
Strand 4	E	34	35	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	20	23	anti-parallel
Strand 3	E	26	28	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	82	84	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RQJ