Analysis of interatomic Contacts of Structural Units in PDB entry:
6RQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RQR entry

There are 2 chains in PDB entry 6RQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 149LEU 273
B
 PRO 149LEU 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6RQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 191Right-handed alpha
Helix 2
AA2
A
211 221Right-handed alpha
Helix 3
AA3
A
232 243Right-handed alpha
Helix 4
AA4
A
248 253Right-handed alpha
Helix 5
AA5
A
260 266Right-handed alpha
Helix 6
AA6
B
186 191Right-handed alpha
Helix 7
AA7
B
211 221Right-handed alpha
Helix 8
AA8
B
232 243Right-handed alpha
Helix 9
AA9
B
248 253Right-handed alpha
Helix 10
AB1
B
260 266Right-handed alpha
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There are 4 sheets in PDB entry 6RQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
225 231anti-parallel
Strand 3
A
198 202anti-parallel
Strand 4
A
205 206anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
225 231anti-parallel
Strand 3
A
198 202anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
166 170anti-parallel
Strand 6
B
269 273anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
198 202anti-parallel
Strand 4
B
174 182anti-parallel
Strand 5
B
166 171anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
198 202anti-parallel
Strand 4
B
205 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il