Analysis of interatomic Contacts of Structural Units in PDB entry:
6RRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RRE entry

There are 6 chains in PDB entry 6RRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 37	ASP 495
B	MET 37	ALA 494
C	ARG 38	ILE 497
D	SER 39	LYS 498
E	SER 39	ALA 494
F	ILE 40	ASP 495

There are100 helices in PDB entry 6RRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	118	127	Right-handed alpha
Helix 3	AA3	A	130	142	Right-handed alpha
Helix 4	AA4	A	144	164	Right-handed alpha
Helix 5	AA5	A	222	226	Right-handed 310
Helix 6	AA6	A	227	235	Right-handed alpha
Helix 7	AA7	A	255	257	Right-handed 310
Helix 8	AA8	A	295	315	Right-handed alpha
Helix 9	AA9	A	337	361	Right-handed alpha
Helix 10	AB1	A	384	398	Right-handed alpha
Helix 11	AB2	A	400	414	Right-handed alpha
Helix 12	AB3	A	417	428	Right-handed alpha
Helix 13	AB4	A	432	447	Right-handed alpha
Helix 14	AB5	A	450	457	Right-handed alpha
Helix 15	AB6	A	461	474	Right-handed alpha
Helix 16	AB7	A	485	490	Right-handed alpha
Helix 17	AB8	B	59	63	Right-handed 310
Helix 18	AB9	B	118	127	Right-handed alpha
Helix 19	AC1	B	130	142	Right-handed alpha
Helix 20	AC2	B	144	164	Right-handed alpha
Helix 21	AC3	B	222	226	Right-handed 310
Helix 22	AC4	B	227	235	Right-handed alpha
Helix 23	AC5	B	295	317	Right-handed alpha
Helix 24	AC6	B	337	355	Right-handed alpha
Helix 25	AC7	B	356	361	Right-handed alpha
Helix 26	AC8	B	384	398	Right-handed alpha
Helix 27	AC9	B	402	414	Right-handed alpha
Helix 28	AD1	B	417	428	Right-handed alpha
Helix 29	AD2	B	432	449	Right-handed alpha
Helix 30	AD3	B	450	457	Right-handed alpha
Helix 31	AD4	B	461	475	Right-handed alpha
Helix 32	AD5	B	479	483	Right-handed 310
Helix 33	AD6	B	484	491	Right-handed alpha
Helix 34	AD7	C	59	63	Right-handed 310
Helix 35	AD8	C	118	127	Right-handed alpha
Helix 36	AD9	C	129	142	Right-handed alpha
Helix 37	AE1	C	144	164	Right-handed alpha
Helix 38	AE2	C	222	226	Right-handed 310
Helix 39	AE3	C	227	235	Right-handed alpha
Helix 40	AE4	C	255	257	Right-handed 310
Helix 41	AE5	C	295	317	Right-handed alpha
Helix 42	AE6	C	337	360	Right-handed alpha
Helix 43	AE7	C	384	398	Right-handed alpha
Helix 44	AE8	C	402	414	Right-handed alpha
Helix 45	AE9	C	417	429	Right-handed alpha
Helix 46	AF1	C	432	449	Right-handed alpha
Helix 47	AF2	C	450	455	Right-handed alpha
Helix 48	AF3	C	461	478	Right-handed alpha
Helix 49	AF4	C	484	491	Right-handed alpha
Helix 50	AF5	D	59	63	Right-handed 310
Helix 51	AF6	D	118	127	Right-handed alpha
Helix 52	AF7	D	129	142	Right-handed alpha
Helix 53	AF8	D	144	164	Right-handed alpha
Helix 54	AF9	D	223	226	Right-handed 310
Helix 55	AG1	D	227	235	Right-handed alpha
Helix 56	AG2	D	255	257	Right-handed 310
Helix 57	AG3	D	295	317	Right-handed alpha
Helix 58	AG4	D	337	356	Right-handed alpha
Helix 59	AG5	D	357	359	Right-handed 310
Helix 60	AG6	D	384	398	Right-handed alpha
Helix 61	AG7	D	402	414	Right-handed alpha
Helix 62	AG8	D	417	429	Right-handed alpha
Helix 63	AG9	D	432	449	Right-handed alpha
Helix 64	AH1	D	450	457	Right-handed alpha
Helix 65	AH2	D	461	475	Right-handed alpha
Helix 66	AH3	D	484	490	Right-handed alpha
Helix 67	AH4	D	491	494	Right-handed 310
Helix 68	AH5	E	59	63	Right-handed 310
Helix 69	AH6	E	118	127	Right-handed alpha
Helix 70	AH7	E	130	142	Right-handed alpha
Helix 71	AH8	E	144	164	Right-handed alpha
Helix 72	AH9	E	222	226	Right-handed 310
Helix 73	AI1	E	227	235	Right-handed alpha
Helix 74	AI2	E	255	257	Right-handed 310
Helix 75	AI3	E	295	317	Right-handed alpha
Helix 76	AI4	E	337	359	Right-handed alpha
Helix 77	AI5	E	384	398	Right-handed alpha
Helix 78	AI6	E	402	414	Right-handed alpha
Helix 79	AI7	E	417	429	Right-handed alpha
Helix 80	AI8	E	432	449	Right-handed alpha
Helix 81	AI9	E	451	457	Right-handed alpha
Helix 82	AJ1	E	461	477	Right-handed alpha
Helix 83	AJ2	E	485	491	Right-handed alpha
Helix 84	AJ3	F	59	63	Right-handed 310
Helix 85	AJ4	F	118	127	Right-handed alpha
Helix 86	AJ5	F	129	142	Right-handed alpha
Helix 87	AJ6	F	144	164	Right-handed alpha
Helix 88	AJ7	F	223	226	Right-handed 310
Helix 89	AJ8	F	227	235	Right-handed alpha
Helix 90	AJ9	F	255	257	Right-handed 310
Helix 91	AK1	F	295	316	Right-handed alpha
Helix 92	AK2	F	337	356	Right-handed alpha
Helix 93	AK3	F	357	359	Right-handed 310
Helix 94	AK4	F	384	398	Right-handed alpha
Helix 95	AK5	F	402	414	Right-handed alpha
Helix 96	AK6	F	417	428	Right-handed alpha
Helix 97	AK7	F	432	449	Right-handed alpha
Helix 98	AK8	F	450	455	Right-handed alpha
Helix 99	AK9	F	461	478	Right-handed alpha
Helix 100	AL1	F	484	490	Right-handed alpha

There are 19 sheets in PDB entry 6RRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	92	98	anti-parallel
Strand 3	A	104	111	anti-parallel
Strand 4	A	169	177	anti-parallel
Strand 5	A	183	190	anti-parallel
Strand 6	A	236	242	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	A	327	334	anti-parallel
Strand 3	A	247	251	anti-parallel
Strand 4	A	194	198	anti-parallel
Strand 5	A	204	205	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	280	285	anti-parallel
Strand 3	A	259	265	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	104	111	anti-parallel
Strand 4	B	169	178	anti-parallel
Strand 5	B	183	190	anti-parallel
Strand 6	B	236	242	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	72	first strand
Strand 2	B	327	334	anti-parallel
Strand 3	B	247	251	anti-parallel
Strand 4	B	194	198	anti-parallel
Strand 5	B	204	206	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	279	285	anti-parallel
Strand 3	B	259	266	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	46	first strand
Strand 2	C	93	98	anti-parallel
Strand 3	C	104	111	anti-parallel
Strand 4	C	169	177	anti-parallel
Strand 5	C	183	190	anti-parallel
Strand 6	C	238	242	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	C	327	334	anti-parallel
Strand 4	C	247	251	anti-parallel
Strand 5	C	194	198	anti-parallel
Strand 6	C	204	206	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	323	324	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	213	first strand
Strand 2	C	280	285	anti-parallel
Strand 3	C	259	265	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	46	first strand
Strand 2	D	93	98	anti-parallel
Strand 3	D	104	111	anti-parallel
Strand 4	D	169	177	anti-parallel
Strand 5	D	183	190	anti-parallel
Strand 6	D	238	242	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	66	71	anti-parallel
Strand 3	D	328	334	anti-parallel
Strand 4	D	247	251	anti-parallel
Strand 5	D	194	198	anti-parallel
Strand 6	D	204	206	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	213	first strand
Strand 2	D	278	285	anti-parallel
Strand 3	D	259	267	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	93	98	anti-parallel
Strand 3	E	104	111	anti-parallel
Strand 4	E	169	177	anti-parallel
Strand 5	E	183	190	anti-parallel
Strand 6	E	236	242	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	66	72	anti-parallel
Strand 3	E	327	334	anti-parallel
Strand 4	E	247	251	anti-parallel
Strand 5	E	194	198	anti-parallel
Strand 6	E	204	206	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	213	first strand
Strand 2	E	280	285	anti-parallel
Strand 3	E	259	264	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	92	98	anti-parallel
Strand 3	F	104	111	anti-parallel
Strand 4	F	169	178	anti-parallel
Strand 5	F	183	187	anti-parallel
Strand 6	F	238	242	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	328	334	anti-parallel
Strand 3	F	247	251	anti-parallel
Strand 4	F	194	198	anti-parallel
Strand 5	F	204	206	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	212	first strand
Strand 2	F	280	285	anti-parallel
Strand 3	F	259	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RRE