Analysis of interatomic Contacts of Structural Units in PDB entry:
6RRR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RRR entry

There are 3 chains in PDB entry 6RRR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 36GLY 484
A
 GLY 486GLN 541
B
 PRO 36GLN 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6RRR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
192 196Right-handed 310
Helix 4
AA4
A
200 209Right-handed alpha
Helix 5
AA5
A
209 226Right-handed alpha
Helix 6
AA6
A
227 229Right-handed 310
Helix 7
AA7
A
230 240Right-handed alpha
Helix 8
AA8
A
262 282Right-handed alpha
Helix 9
AA9
A
300 308Right-handed alpha
Helix 10
AB1
A
325 337Right-handed alpha
Helix 11
AB2
A
337 344Right-handed alpha
Helix 12
AB3
A
344 352Right-handed alpha
Helix 13
AB4
A
354 359Right-handed alpha
Helix 14
AB5
A
362 373Right-handed alpha
Helix 15
AB6
A
373 382Right-handed alpha
Helix 16
AB7
A
405 410Right-handed 310
Helix 17
AB8
A
421 424Right-handed 310
Helix 18
AB9
A
425 450Right-handed alpha
Helix 19
AC1
A
479 484Right-handed alpha
Helix 20
AC2
A
500 512Right-handed alpha
Helix 21
AC3
A
529 533Right-handed 310
Helix 22
AC4
B
48 59Right-handed alpha
Helix 23
AC5
B
100 106Right-handed alpha
Helix 24
AC6
B
192 196Right-handed 310
Helix 25
AC7
B
200 209Right-handed alpha
Helix 26
AC8
B
209 226Right-handed alpha
Helix 27
AC9
B
227 229Right-handed 310
Helix 28
AD1
B
230 240Right-handed alpha
Helix 29
AD2
B
262 282Right-handed alpha
Helix 30
AD3
B
300 308Right-handed alpha
Helix 31
AD4
B
325 336Right-handed alpha
Helix 32
AD5
B
337 344Right-handed alpha
Helix 33
AD6
B
344 352Right-handed alpha
Helix 34
AD7
B
354 359Right-handed alpha
Helix 35
AD8
B
362 373Right-handed alpha
Helix 36
AD9
B
373 383Right-handed alpha
Helix 37
AE1
B
405 410Right-handed 310
Helix 38
AE2
B
421 424Right-handed 310
Helix 39
AE3
B
425 450Right-handed alpha
Helix 40
AE4
B
479 484Right-handed alpha
Helix 41
AE5
B
497 513Right-handed alpha
Helix 42
AE6
B
529 533Right-handed 310
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There are 4 sheets in PDB entry 6RRR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
112 117anti-parallel
Strand 5
A
126 132anti-parallel
Strand 6
A
142 149anti-parallel
Strand 7
A
162 169anti-parallel
Strand 8
A
182 187anti-parallel
Strand 9
A
60 67anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
462 465anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
126 132anti-parallel
Strand 6
B
140 148anti-parallel
Strand 7
B
162 169anti-parallel
Strand 8
B
182 187anti-parallel
Strand 9
B
60 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 459first strand
Strand 2
B
462 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il