Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RTD entry

There are 2 chains in PDB entry 6RTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	GLY 468
B	ALA 3	ARG 183

There are 22 helices in PDB entry 6RTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	13	18	Right-handed alpha
Helix 3	AA3	A	19	22	Right-handed 310
Helix 4	AA4	A	38	49	Right-handed alpha
Helix 5	AA5	A	63	76	Right-handed alpha
Helix 6	AA6	A	85	93	Right-handed alpha
Helix 7	AA7	A	98	102	Right-handed 310
Helix 8	AA8	A	111	114	Right-handed 310
Helix 9	AA9	A	243	245	Right-handed 310
Helix 10	AB1	A	323	327	Right-handed 310
Helix 11	AB2	A	463	468	Right-handed alpha
Helix 12	AB3	B	4	13	Right-handed alpha
Helix 13	AB4	B	13	18	Right-handed alpha
Helix 14	AB5	B	19	22	Right-handed 310
Helix 15	AB6	B	38	49	Right-handed alpha
Helix 16	AB7	B	63	76	Right-handed alpha
Helix 17	AB8	B	85	92	Right-handed alpha
Helix 18	AB9	B	98	102	Right-handed 310
Helix 19	AC1	B	111	114	Right-handed 310
Helix 20	AC2	B	243	245	Right-handed 310
Helix 21	AC3	B	323	327	Right-handed 310
Helix 22	AC4	B	463	468	Right-handed alpha

There are 16 sheets in PDB entry 6RTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	125	129	anti-parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	457	462	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	158	162	anti-parallel
Strand 3	A	167	172	anti-parallel
Strand 4	A	177	183	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	193	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	A	220	225	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	242	first strand
Strand 2	A	247	252	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	285	first strand
Strand 2	A	291	296	anti-parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	312	316	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	332	first strand
Strand 2	A	335	340	anti-parallel
Strand 3	A	347	352	anti-parallel
Strand 4	A	358	363	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	393	397	anti-parallel
Strand 4	A	403	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	420	first strand
Strand 2	A	426	431	anti-parallel
Strand 3	A	436	442	anti-parallel
Strand 4	A	448	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	141	first strand
Strand 2	B	125	129	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	457	462	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	158	162	anti-parallel
Strand 3	B	167	172	anti-parallel
Strand 4	B	177	183	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	193	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	209	214	anti-parallel
Strand 4	B	220	225	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	242	first strand
Strand 2	B	247	252	anti-parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	285	first strand
Strand 2	B	291	295	anti-parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	312	316	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	332	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	347	352	anti-parallel
Strand 4	B	357	363	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	393	397	anti-parallel
Strand 4	B	403	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	420	first strand
Strand 2	B	426	432	anti-parallel
Strand 3	B	436	442	anti-parallel
Strand 4	B	448	454	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTD