Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RTH entry

There are 2 chains in PDB entry 6RTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12ALA 519
B
 ASN 12ALA 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6RTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 43Right-handed alpha
Helix 2
AA2
A
58 81Right-handed alpha
Helix 3
AA3
A
85 103Right-handed alpha
Helix 4
AA4
A
110 126Right-handed alpha
Helix 5
AA5
A
128 150Right-handed alpha
Helix 6
AA6
A
158 167Right-handed alpha
Helix 7
AA7
A
169 185Right-handed alpha
Helix 8
AA8
A
189 205Right-handed alpha
Helix 9
AA9
A
219 227Right-handed alpha
Helix 10
AB1
A
236 254Right-handed alpha
Helix 11
AB2
A
258 262Right-handed 310
Helix 12
AB3
A
268 281Right-handed alpha
Helix 13
AB4
A
316 340Right-handed alpha
Helix 14
AB5
A
343 358Right-handed alpha
Helix 15
AB6
A
367 372Right-handed alpha
Helix 16
AB7
A
373 375Right-handed 310
Helix 17
AB8
A
384 387Right-handed 310
Helix 18
AB9
A
388 394Right-handed alpha
Helix 19
AC1
A
395 406Right-handed alpha
Helix 20
AC2
A
424 430Right-handed alpha
Helix 21
AC3
A
440 450Right-handed alpha
Helix 22
AC4
A
455 473Right-handed alpha
Helix 23
AC5
A
481 491Right-handed alpha
Helix 24
AC6
A
495 509Right-handed alpha
Helix 25
AC7
A
512 518Right-handed alpha
Helix 26
AC8
B
29 43Right-handed alpha
Helix 27
AC9
B
58 81Right-handed alpha
Helix 28
AD1
B
85 103Right-handed alpha
Helix 29
AD2
B
110 125Right-handed alpha
Helix 30
AD3
B
128 149Right-handed alpha
Helix 31
AD4
B
158 169Right-handed alpha
Helix 32
AD5
B
169 185Right-handed alpha
Helix 33
AD6
B
189 205Right-handed alpha
Helix 34
AD7
B
219 227Right-handed alpha
Helix 35
AD8
B
236 254Right-handed alpha
Helix 36
AD9
B
258 262Right-handed 310
Helix 37
AE1
B
268 281Right-handed alpha
Helix 38
AE2
B
316 339Right-handed alpha
Helix 39
AE3
B
345 358Right-handed alpha
Helix 40
AE4
B
367 372Right-handed alpha
Helix 41
AE5
B
373 375Right-handed 310
Helix 42
AE6
B
388 394Right-handed alpha
Helix 43
AE7
B
395 406Right-handed alpha
Helix 44
AE8
B
424 429Right-handed alpha
Helix 45
AE9
B
440 450Right-handed alpha
Helix 46
AF1
B
455 473Right-handed alpha
Helix 47
AF2
B
481 491Right-handed alpha
Helix 48
AF3
B
495 509Right-handed alpha
Helix 49
AF4
B
510 514Right-handed 310
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There are 4 sheets in PDB entry 6RTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
47 52parallel
Strand 3
A
18 22parallel
Strand 4
A
207 210parallel
Strand 5
A
306 312anti-parallel
Strand 6
A
296 299anti-parallel
Strand 7
A
414 416parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
420 421anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
47 52parallel
Strand 3
B
18 22parallel
Strand 4
B
207 210parallel
Strand 5
B
306 312anti-parallel
Strand 6
B
296 299anti-parallel
Strand 7
B
414 416parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
420 421anti-parallel
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