Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RTL entry

There are 7 chains in PDB entry 6RTL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 324
B	ALA 2	ALA 324
C	ALA 2	ALA 324
D	ALA 2	ALA 324
E	ALA 2	ALA 324
F	ALA 2	ALA 324
G	ALA 2	ALA 324

There are 53 helices in PDB entry 6RTL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	109	139	Right-handed alpha
Helix 4	AA4	A	144	146	Right-handed 310
Helix 5	AA5	A	161	169	Right-handed alpha
Helix 6	AA6	A	184	194	Right-handed alpha
Helix 7	AA7	A	296	301	Right-handed alpha
Helix 8	AA8	B	39	46	Right-handed alpha
Helix 9	AA9	B	100	106	Right-handed alpha
Helix 10	AB1	B	109	118	Right-handed alpha
Helix 11	AB2	B	121	138	Right-handed alpha
Helix 12	AB3	B	144	146	Right-handed 310
Helix 13	AB4	B	161	169	Right-handed alpha
Helix 14	AB5	B	183	192	Right-handed alpha
Helix 15	AB6	C	39	46	Right-handed alpha
Helix 16	AB7	C	100	107	Right-handed alpha
Helix 17	AB8	C	109	118	Right-handed alpha
Helix 18	AB9	C	120	138	Right-handed alpha
Helix 19	AC1	C	141	146	Right-handed 310
Helix 20	AC2	C	161	169	Right-handed alpha
Helix 21	AC3	C	183	192	Right-handed alpha
Helix 22	AC4	C	297	302	Right-handed alpha
Helix 23	AC5	D	39	44	Right-handed alpha
Helix 24	AC6	D	100	106	Right-handed alpha
Helix 25	AC7	D	109	118	Right-handed alpha
Helix 26	AC8	D	118	138	Right-handed alpha
Helix 27	AC9	D	141	146	Right-handed 310
Helix 28	AD1	D	161	169	Right-handed alpha
Helix 29	AD2	D	184	192	Right-handed alpha
Helix 30	AD3	D	297	302	Right-handed alpha
Helix 31	AD4	E	5	9	Right-handed 310
Helix 32	AD5	E	39	45	Right-handed alpha
Helix 33	AD6	E	100	107	Right-handed alpha
Helix 34	AD7	E	109	118	Right-handed alpha
Helix 35	AD8	E	121	139	Right-handed alpha
Helix 36	AD9	E	141	146	Right-handed 310
Helix 37	AE1	E	161	169	Right-handed alpha
Helix 38	AE2	E	183	194	Right-handed alpha
Helix 39	AE3	E	228	230	Right-handed 310
Helix 40	AE4	F	15	27	Right-handed alpha
Helix 41	AE5	F	39	46	Right-handed alpha
Helix 42	AE6	F	99	108	Right-handed alpha
Helix 43	AE7	F	109	140	Right-handed alpha
Helix 44	AE8	F	144	148	Right-handed 310
Helix 45	AE9	F	161	168	Right-handed alpha
Helix 46	AF1	F	183	194	Right-handed alpha
Helix 47	AF2	G	15	27	Right-handed alpha
Helix 48	AF3	G	39	46	Right-handed alpha
Helix 49	AF4	G	109	135	Right-handed alpha
Helix 50	AF5	G	144	146	Right-handed 310
Helix 51	AF6	G	161	170	Right-handed alpha
Helix 52	AF7	G	183	193	Right-handed alpha
Helix 53	AF8	G	296	302	Right-handed alpha

There are 41 sheets in PDB entry 6RTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	90	93	anti-parallel
Strand 4	B	67	68	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	267	269	anti-parallel
Strand 3	A	257	258	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	316	319	parallel
Strand 3	A	237	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	215	219	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	208	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	232	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	272	276	anti-parallel
Strand 3	B	90	93	anti-parallel
Strand 4	C	67	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	266	269	anti-parallel
Strand 3	B	256	259	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	317	321	parallel
Strand 3	B	232	234	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	215	217	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	209	210	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	304	305	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	D	58	59	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	272	276	anti-parallel
Strand 3	C	90	93	anti-parallel
Strand 4	D	67	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	267	269	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	317	319	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	215	216	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	232	234	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	E	58	60	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	90	93	anti-parallel
Strand 4	E	67	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	99	first strand
Strand 2	D	265	269	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	317	321	parallel
Strand 3	D	232	234	anti-parallel
Strand 4	D	224	226	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	215	219	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	208	210	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	247	first strand
Strand 2	E	273	277	anti-parallel
Strand 3	E	90	93	anti-parallel
Strand 4	F	67	68	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	265	269	anti-parallel
Strand 3	E	257	260	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	150	first strand
Strand 2	E	317	319	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	181	first strand
Strand 2	E	215	217	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	226	first strand
Strand 2	E	232	234	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	91	first strand
Strand 2	F	273	276	anti-parallel
Strand 3	F	246	247	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	265	269	anti-parallel
Strand 3	F	256	260	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	182	first strand
Strand 2	F	215	218	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	198	first strand
Strand 2	F	209	210	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	226	first strand
Strand 2	F	232	233	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	273	277	anti-parallel
Strand 3	G	245	247	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	97	first strand
Strand 2	G	266	269	anti-parallel
Strand 3	G	256	259	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	317	319	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	180	first strand
Strand 2	G	215	216	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	199	first strand
Strand 2	G	208	210	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	225	226	first strand
Strand 2	G	232	233	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	283	first strand
Strand 2	G	304	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RTL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTL