Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RTT entry

There are 2 chains in PDB entry 6RTT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	SER 511
B	ILE 6	LEU 504

There are 41 helices in PDB entry 6RTT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	23	Right-handed alpha
Helix 2	AA2	A	26	30	Right-handed alpha
Helix 3	AA3	A	53	72	Right-handed alpha
Helix 4	AA4	A	75	93	Right-handed alpha
Helix 5	AA5	A	93	106	Right-handed alpha
Helix 6	AA6	A	108	130	Right-handed alpha
Helix 7	AA7	A	167	180	Right-handed alpha
Helix 8	AA8	A	192	211	Right-handed alpha
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	223	233	Right-handed alpha
Helix 11	AB2	A	245	258	Right-handed alpha
Helix 12	AB3	A	279	293	Right-handed alpha
Helix 13	AB4	A	294	297	Right-handed 310
Helix 14	AB5	A	311	325	Right-handed alpha
Helix 15	AB6	A	343	360	Right-handed alpha
Helix 16	AB7	A	393	398	Right-handed alpha
Helix 17	AB8	A	412	422	Right-handed alpha
Helix 18	AB9	A	435	444	Right-handed alpha
Helix 19	AC1	A	471	475	Right-handed 310
Helix 20	AC2	A	483	487	Right-handed 310
Helix 21	AC3	A	504	508	Right-handed 310
Helix 22	AC4	B	8	23	Right-handed alpha
Helix 23	AC5	B	26	30	Right-handed alpha
Helix 24	AC6	B	53	72	Right-handed alpha
Helix 25	AC7	B	75	93	Right-handed alpha
Helix 26	AC8	B	93	106	Right-handed alpha
Helix 27	AC9	B	108	130	Right-handed alpha
Helix 28	AD1	B	167	180	Right-handed alpha
Helix 29	AD2	B	192	211	Right-handed alpha
Helix 30	AD3	B	213	215	Right-handed 310
Helix 31	AD4	B	223	232	Right-handed alpha
Helix 32	AD5	B	245	258	Right-handed alpha
Helix 33	AD6	B	279	293	Right-handed alpha
Helix 34	AD7	B	294	297	Right-handed 310
Helix 35	AD8	B	311	326	Right-handed alpha
Helix 36	AD9	B	343	360	Right-handed alpha
Helix 37	AE1	B	372	376	Right-handed 310
Helix 38	AE2	B	393	398	Right-handed alpha
Helix 39	AE3	B	412	422	Right-handed alpha
Helix 40	AE4	B	435	444	Right-handed alpha
Helix 41	AE5	B	483	487	Right-handed 310

There are 12 sheets in PDB entry 6RTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	38	first strand
Strand 2	A	45	49	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	145	153	anti-parallel
Strand 3	A	489	497	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	183	187	parallel
Strand 3	A	156	160	parallel
Strand 4	A	238	242	parallel
Strand 5	A	261	265	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	385	388	anti-parallel
Strand 3	A	404	410	parallel
Strand 4	A	302	308	parallel
Strand 5	A	270	274	parallel
Strand 6	A	428	432	parallel
Strand 7	A	452	455	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	479	480	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	38	first strand
Strand 2	B	45	49	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	145	153	anti-parallel
Strand 3	B	489	497	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	183	187	parallel
Strand 3	B	156	160	parallel
Strand 4	B	238	242	parallel
Strand 5	B	261	265	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	385	388	anti-parallel
Strand 3	B	404	410	parallel
Strand 4	B	302	308	parallel
Strand 5	B	270	274	parallel
Strand 6	B	428	432	parallel
Strand 7	B	452	455	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	381	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	471	472	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	479	480	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RTT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTT