Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RTW entry

There are 2 chains in PDB entry 6RTW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 149THR 425
B
 GLN 1HIS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6RTW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 187Right-handed alpha
Helix 2
AA2
A
199 203Right-handed alpha
Helix 3
AA3
A
213 224Right-handed alpha
Helix 4
AA4
A
230 242Right-handed 310
Helix 5
AA5
A
260 270Right-handed alpha
Helix 6
AA6
A
275 286Right-handed alpha
Helix 7
AA7
A
318 324Right-handed alpha
Helix 8
AA8
A
338 342Right-handed alpha
Helix 9
AA9
A
368 377Right-handed alpha
Helix 10
AB1
A
379 383Right-handed 310
Helix 11
AB2
A
388 410Right-handed alpha
Helix 12
AB3
B
61 64Right-handed 310
Helix 13
AB4
B
86 90Right-handed 310
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There are 8 sheets in PDB entry 6RTW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
343 344anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
155 162anti-parallel
Strand 4
A
417 422anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
195 198anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
B
103 110parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
114 118anti-parallel
Strand 5
B
10 12parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
B
103 110parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
336 337anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
354 356anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
80 82anti-parallel
Strand 4
B
67 69anti-parallel
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