Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RTZ entry

There are 2 chains in PDB entry 6RTZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 252
B
 MET 1ARG 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6RTZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
54 71Right-handed alpha
Helix 3
AA3
A
85 96Right-handed alpha
Helix 4
AA4
A
103 108Right-handed alpha
Helix 5
AA5
A
110 121Right-handed alpha
Helix 6
AA6
A
153 163Right-handed alpha
Helix 7
AA7
A
183 191Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
206 217Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
B
13 24Right-handed alpha
Helix 12
AB3
B
54 64Right-handed alpha
Helix 13
AB4
B
66 76Right-handed alpha
Helix 14
AB5
B
84 90Right-handed alpha
Helix 15
AB6
B
148 150Right-handed 310
Helix 16
AB7
B
178 181Right-handed 310
Helix 17
AB8
B
182 197Right-handed alpha
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There are 4 sheets in PDB entry 6RTZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
5 13anti-parallel
Strand 4
A
46 51parallel
Strand 5
A
77 80parallel
Strand 6
A
99 102parallel
Strand 7
A
125 134parallel
Strand 8
A
137 142anti-parallel
Strand 9
A
147 152anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
5 13anti-parallel
Strand 4
A
220 223parallel
Strand 5
A
198 201parallel
Strand 6
A
167 172parallel
Strand 7
A
125 134parallel
Strand 8
A
137 142anti-parallel
Strand 9
A
147 152anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
2 6parallel
Strand 3
B
45 48parallel
Strand 4
B
79 83parallel
Strand 5
B
172 175parallel
Strand 6
B
161 169anti-parallel
Strand 7
B
152 158anti-parallel
Strand 8
B
120 128anti-parallel
Strand 9
B
135 141anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
93 94anti-parallel
Strand 3
B
109 112parallel
Strand 4
B
143 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il