Analysis of interatomic Contacts of Structural Units in PDB entry:
6RU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RU5 entry

There are 2 chains in PDB entry 6RU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	PRO 665
B	VAL 673	HIS 1312

There are 36 helices in PDB entry 6RU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	303	309	Right-handed alpha
Helix 3	AA3	A	448	452	Right-handed 310
Helix 4	AA4	A	600	604	Right-handed alpha
Helix 5	AA5	A	612	623	Right-handed alpha
Helix 6	AA6	A	636	643	Right-handed alpha
Helix 7	AA7	B	676	684	Right-handed alpha
Helix 8	AA8	B	691	698	Right-handed alpha
Helix 9	AA9	B	706	711	Right-handed alpha
Helix 10	AB1	B	717	736	Right-handed alpha
Helix 11	AB2	B	988	996	Right-handed alpha
Helix 12	AB3	B	996	1001	Right-handed alpha
Helix 13	AB4	B	1012	1017	Right-handed 310
Helix 14	AB5	B	1018	1031	Right-handed alpha
Helix 15	AB6	B	1033	1038	Right-handed alpha
Helix 16	AB7	B	1040	1058	Right-handed alpha
Helix 17	AB8	B	1075	1090	Right-handed alpha
Helix 18	AB9	B	1096	1112	Right-handed alpha
Helix 19	AC1	B	1136	1152	Right-handed alpha
Helix 20	AC2	B	1164	1179	Right-handed alpha
Helix 21	AC3	B	1180	1183	Right-handed 310
Helix 22	AC4	B	1185	1198	Right-handed alpha
Helix 23	AC5	B	1204	1214	Right-handed alpha
Helix 24	AC6	B	1215	1218	Right-handed 310
Helix 25	AC7	B	1226	1243	Right-handed alpha
Helix 26	AC8	B	1248	1257	Right-handed alpha
Helix 27	AC9	B	1268	1282	Right-handed alpha
Helix 28	AD1	B	1414	1424	Right-handed alpha
Helix 29	AD2	B	1508	1517	Right-handed alpha
Helix 30	AD3	B	1528	1537	Right-handed alpha
Helix 31	AD4	B	1590	1595	Right-handed alpha
Helix 32	AD5	B	1609	1611	Right-handed 310
Helix 33	AD6	B	1633	1637	Right-handed 310
Helix 34	AD7	B	1639	1658	Right-handed alpha
Helix 35	AD8	C	62	65	Right-handed 310
Helix 36	AD9	C	87	91	Right-handed 310

There are 27 sheets in PDB entry 6RU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	27	31	anti-parallel
Strand 3	A	644	648	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	115	124	parallel
Strand 3	A	106	112	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	73	76	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	144	152	anti-parallel
Strand 3	A	188	194	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	181	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	203	210	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	251	259	anti-parallel
Strand 3	A	299	302	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	338	349	parallel
Strand 3	A	323	332	anti-parallel
Strand 4	A	267	277	anti-parallel
Strand 5	A	280	293	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	370	377	anti-parallel
Strand 3	A	406	411	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	438	445	parallel
Strand 3	A	420	426	anti-parallel
Strand 4	A	389	391	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	470	478	anti-parallel
Strand 3	A	514	520	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	528	538	anti-parallel
Strand 4	A	544	554	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	580	587	anti-parallel
Strand 3	B	787	794	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	778	first strand
Strand 2	A	591	599	anti-parallel
Strand 3	B	801	810	anti-parallel
Strand 4	B	814	817	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	778	first strand
Strand 2	A	591	599	anti-parallel
Strand 3	B	801	810	anti-parallel
Strand 4	B	821	824	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	834	first strand
Strand 2	B	844	853	anti-parallel
Strand 3	B	892	902	anti-parallel
Strand 4	B	872	873	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	834	first strand
Strand 2	B	844	853	anti-parallel
Strand 3	B	1469	1470	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	839	840	first strand
Strand 2	B	922	932	parallel
Strand 3	B	906	916	anti-parallel
Strand 4	B	860	866	anti-parallel
Strand 5	B	882	888	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	938	first strand
Strand 2	B	1340	1350	anti-parallel
Strand 3	B	941	947	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	938	first strand
Strand 2	B	1340	1350	anti-parallel
Strand 3	B	977	983	anti-parallel
Strand 4	B	1319	1324	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	959	961	first strand
Strand 2	B	1331	1333	anti-parallel
Strand 3	B	1296	1299	anti-parallel
Strand 4	B	1307	1309	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1060	1061	first strand
Strand 2	B	1065	1066	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1293	1294	first strand
Strand 2	B	1336	1337	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1369	first strand
Strand 2	B	1382	1392	anti-parallel
Strand 3	B	1459	1465	anti-parallel
Strand 4	B	1411	1413	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1431	1432	first strand
Strand 2	B	1443	1448	anti-parallel
Strand 3	B	1401	1406	anti-parallel
Strand 4	B	1475	1481	anti-parallel
Strand 5	B	1484	1493	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1620	1621	first strand
Strand 2	B	1581	1587	parallel
Strand 3	B	1558	1570	anti-parallel
Strand 4	B	1541	1554	anti-parallel
Strand 5	B	1601	1607	anti-parallel
Strand 6	B	1627	1631	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	117	121	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	117	121	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RU5