Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RVB entry

There are 4 chains in PDB entry 6RVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 443
B	MET 1	ARG 443
C	MET 1	ARG 443
D	MET 1	ARG 443

There are 59 helices in PDB entry 6RVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	42	44	Right-handed 310
Helix 3	AA3	A	45	51	Right-handed alpha
Helix 4	AA4	A	56	61	Right-handed 310
Helix 5	AA5	A	64	71	Right-handed alpha
Helix 6	AA6	A	85	90	Right-handed alpha
Helix 7	AA7	A	135	146	Right-handed alpha
Helix 8	AA8	A	158	171	Right-handed alpha
Helix 9	AA9	A	189	203	Right-handed alpha
Helix 10	AB1	A	247	253	Right-handed alpha
Helix 11	AB2	A	298	314	Right-handed alpha
Helix 12	AB3	A	342	349	Right-handed alpha
Helix 13	AB4	A	400	410	Right-handed alpha
Helix 14	AB5	A	413	419	Right-handed alpha
Helix 15	AB6	A	433	439	Right-handed alpha
Helix 16	AB7	B	12	25	Right-handed alpha
Helix 17	AB8	B	42	44	Right-handed 310
Helix 18	AB9	B	45	51	Right-handed alpha
Helix 19	AC1	B	56	61	Right-handed 310
Helix 20	AC2	B	64	71	Right-handed alpha
Helix 21	AC3	B	85	90	Right-handed alpha
Helix 22	AC4	B	135	146	Right-handed alpha
Helix 23	AC5	B	158	171	Right-handed alpha
Helix 24	AC6	B	189	203	Right-handed alpha
Helix 25	AC7	B	247	253	Right-handed alpha
Helix 26	AC8	B	298	314	Right-handed alpha
Helix 27	AC9	B	342	349	Right-handed alpha
Helix 28	AD1	B	400	410	Right-handed alpha
Helix 29	AD2	B	413	420	Right-handed alpha
Helix 30	AD3	B	433	439	Right-handed alpha
Helix 31	AD4	C	12	25	Right-handed alpha
Helix 32	AD5	C	42	44	Right-handed 310
Helix 33	AD6	C	45	51	Right-handed alpha
Helix 34	AD7	C	56	61	Right-handed 310
Helix 35	AD8	C	64	71	Right-handed alpha
Helix 36	AD9	C	135	146	Right-handed alpha
Helix 37	AE1	C	158	171	Right-handed alpha
Helix 38	AE2	C	189	203	Right-handed alpha
Helix 39	AE3	C	247	253	Right-handed alpha
Helix 40	AE4	C	298	314	Right-handed alpha
Helix 41	AE5	C	342	349	Right-handed alpha
Helix 42	AE6	C	400	410	Right-handed alpha
Helix 43	AE7	C	413	420	Right-handed alpha
Helix 44	AE8	C	433	439	Right-handed alpha
Helix 45	AE9	D	12	25	Right-handed alpha
Helix 46	AF1	D	42	44	Right-handed 310
Helix 47	AF2	D	45	51	Right-handed alpha
Helix 48	AF3	D	56	61	Right-handed 310
Helix 49	AF4	D	64	71	Right-handed alpha
Helix 50	AF5	D	85	90	Right-handed alpha
Helix 51	AF6	D	135	146	Right-handed alpha
Helix 52	AF7	D	158	171	Right-handed alpha
Helix 53	AF8	D	189	203	Right-handed alpha
Helix 54	AF9	D	247	253	Right-handed alpha
Helix 55	AG1	D	298	314	Right-handed alpha
Helix 56	AG2	D	342	349	Right-handed alpha
Helix 57	AG3	D	400	410	Right-handed alpha
Helix 58	AG4	D	413	419	Right-handed alpha
Helix 59	AG5	D	433	439	Right-handed alpha

There are 28 sheets in PDB entry 6RVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	29	33	parallel
Strand 3	A	4	8	parallel
Strand 4	A	108	111	parallel
Strand 5	A	276	278	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	94	96	anti-parallel
Strand 3	A	101	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	243	245	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	236	239	parallel
Strand 3	A	151	155	parallel
Strand 4	A	174	178	parallel
Strand 5	A	205	208	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	226	227	anti-parallel
Strand 3	A	230	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	292	294	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	331	first strand
Strand 2	A	334	340	anti-parallel
Strand 3	A	386	393	anti-parallel
Strand 4	A	372	380	anti-parallel
Strand 5	A	353	361	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	29	33	parallel
Strand 3	B	4	8	parallel
Strand 4	B	108	111	parallel
Strand 5	B	276	278	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	94	96	anti-parallel
Strand 3	B	101	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	243	245	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	236	239	parallel
Strand 3	B	151	155	parallel
Strand 4	B	174	178	parallel
Strand 5	B	206	208	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	226	227	anti-parallel
Strand 3	B	230	231	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	292	294	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	331	first strand
Strand 2	B	334	340	anti-parallel
Strand 3	B	386	393	anti-parallel
Strand 4	B	372	380	anti-parallel
Strand 5	B	353	361	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	77	first strand
Strand 2	C	29	34	parallel
Strand 3	C	4	8	parallel
Strand 4	C	108	111	parallel
Strand 5	C	276	278	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	C	101	103	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	243	245	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	236	239	parallel
Strand 3	C	151	155	parallel
Strand 4	C	174	178	parallel
Strand 5	C	205	208	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	215	first strand
Strand 2	C	226	227	anti-parallel
Strand 3	C	230	231	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	292	294	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	331	first strand
Strand 2	C	334	340	anti-parallel
Strand 3	C	386	393	anti-parallel
Strand 4	C	372	380	anti-parallel
Strand 5	C	353	361	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	29	33	parallel
Strand 3	D	4	8	parallel
Strand 4	D	108	111	parallel
Strand 5	D	276	278	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	94	96	anti-parallel
Strand 3	D	101	103	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	243	245	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	236	239	parallel
Strand 3	D	151	155	parallel
Strand 4	D	174	178	parallel
Strand 5	D	205	208	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	226	227	anti-parallel
Strand 3	D	230	231	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	292	294	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	331	first strand
Strand 2	D	334	340	anti-parallel
Strand 3	D	386	393	anti-parallel
Strand 4	D	372	380	anti-parallel
Strand 5	D	353	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVB