Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RVC entry

There are 6 chains in PDB entry 6RVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 842	ALA 935
B	LYS 842	ALA 935
C	LYS 842	ALA 935
D	VAL 2	HIS 125
E	GLN 3	SER 124
F	GLN 3	SER 124

There are 27 helices in PDB entry 6RVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	843	865	Right-handed alpha
Helix 2	AA2	A	877	888	Right-handed alpha
Helix 3	AA3	A	898	904	Right-handed 310
Helix 4	AA4	A	918	930	Right-handed alpha
Helix 5	AA5	A	931	935	Right-handed 310
Helix 6	AA6	B	843	865	Right-handed alpha
Helix 7	AA7	B	877	888	Right-handed alpha
Helix 8	AA8	B	898	904	Right-handed 310
Helix 9	AA9	B	918	930	Right-handed alpha
Helix 10	AB1	B	931	935	Right-handed 310
Helix 11	AB2	C	843	865	Right-handed alpha
Helix 12	AB3	C	877	888	Right-handed alpha
Helix 13	AB4	C	900	905	Right-handed alpha
Helix 14	AB5	C	918	930	Right-handed alpha
Helix 15	AB6	C	931	935	Right-handed 310
Helix 16	AB7	D	28	32	Right-handed 310
Helix 17	AB8	D	74	76	Right-handed 310
Helix 18	AB9	D	87	91	Right-handed 310
Helix 19	AC1	D	107	109	Right-handed 310
Helix 20	AC2	E	28	32	Right-handed 310
Helix 21	AC3	E	74	76	Right-handed 310
Helix 22	AC4	E	87	91	Right-handed 310
Helix 23	AC5	E	107	109	Right-handed 310
Helix 24	AC6	F	28	32	Right-handed 310
Helix 25	AC7	F	74	76	Right-handed 310
Helix 26	AC8	F	87	91	Right-handed 310
Helix 27	AC9	F	107	109	Right-handed 310

There are 9 sheets in PDB entry 6RVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	118	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	118	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	118	123	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	118	123	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	111	114	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	118	123	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	118	123	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	111	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVC