Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RVD entry

There are 3 chains in PDB entry 6RVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 72PRO 1180
B
 PRO 76PRO 1180
C
 CYS 24GLY 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 6RVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 97Right-handed alpha
Helix 2
AA2
A
99 115Right-handed alpha
Helix 3
AA3
A
116 118Right-handed 310
Helix 4
AA4
A
124 128Right-handed 310
Helix 5
AA5
A
133 146Right-handed alpha
Helix 6
AA6
A
148 150Right-handed 310
Helix 7
AA7
A
171 187Right-handed alpha
Helix 8
AA8
A
198 202Right-handed 310
Helix 9
AA9
A
215 222Right-handed alpha
Helix 10
AB1
A
235 239Right-handed 310
Helix 11
AB2
A
260 271Right-handed alpha
Helix 12
AB3
A
275 285Right-handed alpha
Helix 13
AB4
A
318 324Right-handed alpha
Helix 14
AB5
A
368 376Right-handed alpha
Helix 15
AB6
A
388 409Right-handed alpha
Helix 16
AB7
A
423 435Right-handed alpha
Helix 17
AB8
A
438 457Right-handed alpha
Helix 18
AB9
A
466 491Right-handed alpha
Helix 19
AC1
A
496 502Right-handed alpha
Helix 20
AC2
A
502 529Right-handed alpha
Helix 21
AC3
A
536 563Right-handed alpha
Helix 22
AC4
A
567 591Right-handed alpha
Helix 23
AC5
A
591 606Right-handed alpha
Helix 24
AC6
A
733 741Right-handed alpha
Helix 25
AC7
A
746 770Right-handed alpha
Helix 26
AC8
A
776 781Right-handed alpha
Helix 27
AC9
A
785 798Right-handed alpha
Helix 28
AD1
A
816 825Right-handed alpha
Helix 29
AD2
A
843 866Right-handed alpha
Helix 30
AD3
A
877 888Right-handed alpha
Helix 31
AD4
A
897 902Right-handed 310
Helix 32
AD5
A
918 930Right-handed alpha
Helix 33
AD6
A
930 937Right-handed alpha
Helix 34
AD7
A
983 1005Right-handed alpha
Helix 35
AD8
A
1013 1018Right-handed alpha
Helix 36
AD9
A
1023 1047Right-handed alpha
Helix 37
AE1
A
1049 1075Right-handed alpha
Helix 38
AE2
A
1079 1093Right-handed alpha
Helix 39
AE3
A
1093 1106Right-handed alpha
Helix 40
AE4
A
1110 1123Right-handed alpha
Helix 41
AE5
A
1123 1139Right-handed alpha
Helix 42
AE6
A
1145 1152Right-handed alpha
Helix 43
AE7
A
1152 1168Right-handed alpha
Helix 44
AE8
A
1169 1178Right-handed alpha
Helix 45
AE9
B
77 97Right-handed alpha
Helix 46
AF1
B
97 115Right-handed alpha
Helix 47
AF2
B
116 118Right-handed 310
Helix 48
AF3
B
124 129Right-handed alpha
Helix 49
AF4
B
135 147Right-handed alpha
Helix 50
AF5
B
171 187Right-handed alpha
Helix 51
AF6
B
213 221Right-handed alpha
Helix 52
AF7
B
230 242Right-handed 310
Helix 53
AF8
B
260 271Right-handed alpha
Helix 54
AF9
B
275 285Right-handed alpha
Helix 55
AG1
B
368 376Right-handed alpha
Helix 56
AG2
B
388 409Right-handed alpha
Helix 57
AG3
B
423 435Right-handed alpha
Helix 58
AG4
B
438 457Right-handed alpha
Helix 59
AG5
B
466 491Right-handed alpha
Helix 60
AG6
B
496 529Right-handed alpha
Helix 61
AG7
B
536 561Right-handed alpha
Helix 62
AG8
B
567 591Right-handed alpha
Helix 63
AG9
B
591 605Right-handed alpha
Helix 64
AH1
B
736 741Right-handed alpha
Helix 65
AH2
B
742 744Right-handed 310
Helix 66
AH3
B
746 770Right-handed alpha
Helix 67
AH4
B
785 798Right-handed alpha
Helix 68
AH5
B
815 826Right-handed alpha
Helix 69
AH6
B
843 866Right-handed alpha
Helix 70
AH7
B
877 889Right-handed alpha
Helix 71
AH8
B
898 902Right-handed 310
Helix 72
AH9
B
918 930Right-handed alpha
Helix 73
AI1
B
930 937Right-handed alpha
Helix 74
AI2
B
983 1005Right-handed alpha
Helix 75
AI3
B
1013 1018Right-handed alpha
Helix 76
AI4
B
1019 1022Right-handed 310
Helix 77
AI5
B
1023 1048Right-handed alpha
Helix 78
AI6
B
1049 1075Right-handed alpha
Helix 79
AI7
B
1079 1107Right-handed alpha
Helix 80
AI8
B
1110 1138Right-handed alpha
Helix 81
AI9
B
1139 1141Right-handed 310
Helix 82
AJ1
B
1145 1152Right-handed alpha
Helix 83
AJ2
B
1152 1168Right-handed alpha
Helix 84
AJ3
B
1169 1178Right-handed alpha
Helix 85
AJ4
C
70 76Right-handed 310
Helix 86
AJ5
C
93 95Right-handed 310
Helix 87
AJ6
C
99 117Right-handed alpha
Helix 88
AJ7
C
138 143Right-handed 310
Helix 89
AJ8
C
154 156Right-handed 310
Helix 90
AJ9
C
157 167Right-handed alpha
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There are 12 sheets in PDB entry 6RVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
C
29 30anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
354 365anti-parallel
Strand 3
A
343 348anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
354 365anti-parallel
Strand 3
A
155 162anti-parallel
Strand 4
A
417 422anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
195 197anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 978first strand
Strand 2
A
801 807anti-parallel
Strand 3
A
1008 1012anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
359 367anti-parallel
Strand 3
B
343 344anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
359 367anti-parallel
Strand 3
B
153 162anti-parallel
Strand 4
B
417 422anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
195 197anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
354 356anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
974 978first strand
Strand 2
B
801 805anti-parallel
Strand 3
B
1010 1012anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
172 174anti-parallel
Strand 3
C
181 184anti-parallel
Strand 4
C
145 150anti-parallel
Strand 5
C
122 126anti-parallel
Strand 6
C
84 86parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
97 98anti-parallel
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