Analysis of interatomic Contacts of Structural Units in PDB entry:
6RVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RVM entry

There are 4 chains in PDB entry 6RVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12PHE 315
B
 ALA 12PHE 315
C
 SER 9ASP 316
D
 SER 9ASP 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6RVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
85 94Right-handed alpha
Helix 6
AA6
A
108 124Right-handed alpha
Helix 7
AA7
A
145 158Right-handed alpha
Helix 8
AA8
A
165 169Right-handed 310
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
175 193Right-handed alpha
Helix 11
AB2
A
194 197Right-handed 310
Helix 12
AB3
A
210 216Right-handed alpha
Helix 13
AB4
A
235 246Right-handed alpha
Helix 14
AB5
A
247 255Right-handed alpha
Helix 15
AB6
A
271 286Right-handed alpha
Helix 16
AB7
A
300 303Right-handed 310
Helix 17
AB8
B
20 30Right-handed alpha
Helix 18
AB9
B
46 52Right-handed alpha
Helix 19
AC1
B
74 85Right-handed alpha
Helix 20
AC2
B
85 94Right-handed alpha
Helix 21
AC3
B
108 124Right-handed alpha
Helix 22
AC4
B
148 158Right-handed alpha
Helix 23
AC5
B
165 167Right-handed 310
Helix 24
AC6
B
168 175Right-handed alpha
Helix 25
AC7
B
175 193Right-handed alpha
Helix 26
AC8
B
194 197Right-handed 310
Helix 27
AC9
B
210 217Right-handed alpha
Helix 28
AD1
B
237 245Right-handed alpha
Helix 29
AD2
B
247 254Right-handed alpha
Helix 30
AD3
B
271 286Right-handed alpha
Helix 31
AD4
B
300 303Right-handed 310
Helix 32
AD5
C
20 33Right-handed alpha
Helix 33
AD6
C
46 52Right-handed alpha
Helix 34
AD7
C
74 85Right-handed alpha
Helix 35
AD8
C
85 94Right-handed alpha
Helix 36
AD9
C
108 124Right-handed alpha
Helix 37
AE1
C
139 144Right-handed 310
Helix 38
AE2
C
145 158Right-handed alpha
Helix 39
AE3
C
165 169Right-handed 310
Helix 40
AE4
C
170 175Right-handed alpha
Helix 41
AE5
C
175 193Right-handed alpha
Helix 42
AE6
C
194 197Right-handed 310
Helix 43
AE7
C
210 218Right-handed 310
Helix 44
AE8
C
235 245Right-handed alpha
Helix 45
AE9
C
247 257Right-handed alpha
Helix 46
AF1
C
271 286Right-handed alpha
Helix 47
AF2
C
300 303Right-handed 310
Helix 48
AF3
D
20 34Right-handed alpha
Helix 49
AF4
D
46 52Right-handed alpha
Helix 50
AF5
D
74 85Right-handed alpha
Helix 51
AF6
D
85 94Right-handed alpha
Helix 52
AF7
D
108 124Right-handed alpha
Helix 53
AF8
D
145 158Right-handed alpha
Helix 54
AF9
D
165 169Right-handed 310
Helix 55
AG1
D
170 175Right-handed alpha
Helix 56
AG2
D
175 193Right-handed alpha
Helix 57
AG3
D
194 197Right-handed 310
Helix 58
AG4
D
210 215Right-handed alpha
Helix 59
AG5
D
216 218Right-handed 310
Helix 60
AG6
D
235 245Right-handed alpha
Helix 61
AG7
D
247 257Right-handed alpha
Helix 62
AG8
D
271 286Right-handed alpha
Helix 63
AG9
D
300 303Right-handed 310
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There are 2 sheets in PDB entry 6RVM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
38 44parallel
Strand 3
A
14 19parallel
Strand 4
A
98 102parallel
Strand 5
A
127 132parallel
Strand 6
A
160 163parallel
Strand 7
A
199 203parallel
Strand 8
A
223 232parallel
Strand 9
A
305 313anti-parallel
Strand 10
A
259 266anti-parallel
Strand 11
A
291 298parallel
Strand 12
B
291 298anti-parallel
Strand 13
B
259 266parallel
Strand 14
B
306 313anti-parallel
Strand 15
B
223 231anti-parallel
Strand 16
B
199 204parallel
Strand 17
B
160 163parallel
Strand 18
B
127 132parallel
Strand 19
B
98 103parallel
Strand 20
B
14 19parallel
Strand 21
B
38 44parallel
Strand 22
B
57 60parallel
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There are 22 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
39 44parallel
Strand 3
C
13 19parallel
Strand 4
C
96 102parallel
Strand 5
C
127 132parallel
Strand 6
C
160 163parallel
Strand 7
C
199 203parallel
Strand 8
C
223 232parallel
Strand 9
C
305 313anti-parallel
Strand 10
C
259 266anti-parallel
Strand 11
C
291 298parallel
Strand 12
D
291 298anti-parallel
Strand 13
D
259 266parallel
Strand 14
D
305 313anti-parallel
Strand 15
D
223 232anti-parallel
Strand 16
D
199 203parallel
Strand 17
D
160 163parallel
Strand 18
D
127 132parallel
Strand 19
D
98 102parallel
Strand 20
D
14 19parallel
Strand 21
D
39 44parallel
Strand 22
D
57 60parallel
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