Analysis of interatomic Contacts of Structural Units in PDB entry:
6RXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RXM entry

There are 18 chains in PDB entry 6RXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 40	LYS 274
B	LYS 40	LEU 273
C	LYS 40	LYS 274
D	LYS 40	LEU 273
E	LYS 40	GLY 272
F	LYS 40	GLY 272
G	GLY 13	ALA 15
G	ARG 17	ARG 19
H	GLY 13	ALA 15
H	ARG 17	ARG 19
I	GLY 13	ALA 15
I	ARG 17	ARG 19
J	GLY 13	ALA 15
J	ARG 17	LYS 20
K	GLY 13	ALA 15
K	ARG 17	ILE 21
L	LYS 12	ALA 15
L	ARG 17	LEU 22

There are 62 helices in PDB entry 6RXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed alpha
Helix 3	AA3	A	77	84	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	107	121	Right-handed alpha
Helix 6	AA6	A	133	139	Right-handed alpha
Helix 7	AA7	A	196	207	Right-handed alpha
Helix 8	AA8	A	221	223	Right-handed 310
Helix 9	AA9	A	224	232	Right-handed alpha
Helix 10	AB1	A	257	272	Right-handed alpha
Helix 11	AB2	B	49	56	Right-handed 310
Helix 12	AB3	B	72	76	Right-handed alpha
Helix 13	AB4	B	77	84	Right-handed alpha
Helix 14	AB5	B	84	100	Right-handed alpha
Helix 15	AB6	B	107	121	Right-handed alpha
Helix 16	AB7	B	133	139	Right-handed alpha
Helix 17	AB8	B	196	207	Right-handed alpha
Helix 18	AB9	B	221	223	Right-handed 310
Helix 19	AC1	B	224	232	Right-handed alpha
Helix 20	AC2	B	257	271	Right-handed alpha
Helix 21	AC3	C	49	56	Right-handed 310
Helix 22	AC4	C	72	76	Right-handed alpha
Helix 23	AC5	C	77	84	Right-handed alpha
Helix 24	AC6	C	84	100	Right-handed alpha
Helix 25	AC7	C	107	121	Right-handed alpha
Helix 26	AC8	C	133	139	Right-handed alpha
Helix 27	AC9	C	196	207	Right-handed alpha
Helix 28	AD1	C	221	223	Right-handed 310
Helix 29	AD2	C	224	232	Right-handed alpha
Helix 30	AD3	C	257	272	Right-handed alpha
Helix 31	AD4	D	49	56	Right-handed 310
Helix 32	AD5	D	71	76	Right-handed alpha
Helix 33	AD6	D	77	84	Right-handed alpha
Helix 34	AD7	D	84	100	Right-handed alpha
Helix 35	AD8	D	107	121	Right-handed alpha
Helix 36	AD9	D	133	139	Right-handed alpha
Helix 37	AE1	D	196	207	Right-handed alpha
Helix 38	AE2	D	221	223	Right-handed 310
Helix 39	AE3	D	224	232	Right-handed alpha
Helix 40	AE4	D	257	272	Right-handed alpha
Helix 41	AE5	E	49	56	Right-handed 310
Helix 42	AE6	E	72	76	Right-handed alpha
Helix 43	AE7	E	77	84	Right-handed alpha
Helix 44	AE8	E	84	100	Right-handed alpha
Helix 45	AE9	E	107	121	Right-handed alpha
Helix 46	AF1	E	133	139	Right-handed alpha
Helix 47	AF2	E	196	207	Right-handed alpha
Helix 48	AF3	E	221	223	Right-handed 310
Helix 49	AF4	E	224	232	Right-handed alpha
Helix 50	AF5	E	246	250	Right-handed 310
Helix 51	AF6	E	257	272	Right-handed alpha
Helix 52	AF7	F	49	56	Right-handed 310
Helix 53	AF8	F	71	76	Right-handed alpha
Helix 54	AF9	F	77	84	Right-handed alpha
Helix 55	AG1	F	84	100	Right-handed alpha
Helix 56	AG2	F	107	121	Right-handed alpha
Helix 57	AG3	F	133	139	Right-handed alpha
Helix 58	AG4	F	196	207	Right-handed alpha
Helix 59	AG5	F	221	223	Right-handed 310
Helix 60	AG6	F	224	232	Right-handed alpha
Helix 61	AG7	F	246	250	Right-handed 310
Helix 62	AG8	F	257	271	Right-handed alpha

There are 22 sheets in PDB entry 6RXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	124	128	parallel
Strand 3	A	43	47	parallel
Strand 4	A	209	213	parallel
Strand 5	A	235	240	parallel
Strand 6	A	252	255	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	70	71	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	148	155	anti-parallel
Strand 3	A	183	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	G	17	18	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	124	128	parallel
Strand 3	B	43	47	parallel
Strand 4	B	209	213	parallel
Strand 5	B	235	240	parallel
Strand 6	B	252	255	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	70	71	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	148	155	anti-parallel
Strand 3	B	183	187	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	H	17	18	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	124	128	parallel
Strand 3	C	43	47	parallel
Strand 4	C	209	213	parallel
Strand 5	C	235	240	parallel
Strand 6	C	252	255	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	70	71	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	183	187	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	I	17	18	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	124	128	parallel
Strand 3	D	43	47	parallel
Strand 4	D	209	213	parallel
Strand 5	D	235	240	parallel
Strand 6	D	252	255	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	148	155	anti-parallel
Strand 3	D	183	187	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	J	17	18	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	124	128	parallel
Strand 3	E	43	47	parallel
Strand 4	E	209	213	parallel
Strand 5	E	235	240	parallel
Strand 6	E	252	255	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	70	71	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	163	first strand
Strand 2	E	148	155	anti-parallel
Strand 3	E	183	187	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	220	first strand
Strand 2	K	17	18	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	124	128	parallel
Strand 3	F	43	47	parallel
Strand 4	F	209	213	parallel
Strand 5	F	235	240	parallel
Strand 6	F	252	255	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	148	155	anti-parallel
Strand 3	F	183	187	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	220	first strand
Strand 2	L	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RXM