Analysis of interatomic Contacts of Structural Units in PDB entry:
6RXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RXP entry

There are 6 chains in PDB entry 6RXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 40GLY 272
B
 LYS 40LYS 274
C
 GLY 13ALA 15
C
 ARG 17LEU 22
D
 LYS 12ALA 15
D
 ARG 17LEU 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6RXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed alpha
Helix 2
AA2
A
72 76Right-handed alpha
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
84 100Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
133 139Right-handed alpha
Helix 7
AA7
A
196 207Right-handed alpha
Helix 8
AA8
A
221 223Right-handed 310
Helix 9
AA9
A
224 232Right-handed alpha
Helix 10
AB1
A
257 272Right-handed alpha
Helix 11
AB2
B
49 54Right-handed alpha
Helix 12
AB3
B
72 76Right-handed alpha
Helix 13
AB4
B
77 84Right-handed alpha
Helix 14
AB5
B
84 100Right-handed alpha
Helix 15
AB6
B
107 121Right-handed alpha
Helix 16
AB7
B
133 139Right-handed alpha
Helix 17
AB8
B
196 207Right-handed alpha
Helix 18
AB9
B
221 223Right-handed 310
Helix 19
AC1
B
224 232Right-handed alpha
Helix 20
AC2
B
246 250Right-handed 310
Helix 21
AC3
B
257 274Right-handed alpha
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There are 8 sheets in PDB entry 6RXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
124 128parallel
Strand 3
A
43 47parallel
Strand 4
A
209 213parallel
Strand 5
A
235 240parallel
Strand 6
A
252 255parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
183 187anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
C
17 18anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
124 128parallel
Strand 3
B
43 47parallel
Strand 4
B
209 213parallel
Strand 5
B
235 240parallel
Strand 6
B
252 255parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
66 67anti-parallel
Strand 3
B
70 71anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
148 155anti-parallel
Strand 3
B
183 187anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
D
17 18anti-parallel
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