Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RYF entry

There are 2 chains in PDB entry 6RYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 46ARG 939
G
 ARG 2ILE 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6RYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 190Right-handed 310
Helix 2
AA2
A
243 247Right-handed 310
Helix 3
AA3
A
272 278Right-handed 310
Helix 4
AA4
A
279 298Right-handed alpha
Helix 5
AA5
A
330 332Right-handed 310
Helix 6
AA6
A
340 357Right-handed alpha
Helix 7
AA7
A
368 371Right-handed 310
Helix 8
AA8
A
372 391Right-handed alpha
Helix 9
AA9
A
392 398Right-handed 310
Helix 10
AB1
A
399 412Right-handed alpha
Helix 11
AB2
A
425 432Right-handed alpha
Helix 12
AB3
A
434 453Right-handed alpha
Helix 13
AB4
A
453 468Right-handed alpha
Helix 14
AB5
A
474 484Right-handed alpha
Helix 15
AB6
A
516 526Right-handed alpha
Helix 16
AB7
A
602 605Right-handed 310
Helix 17
AB8
A
615 628Right-handed alpha
Helix 18
AB9
A
629 631Right-handed 310
Helix 19
AC1
A
632 649Right-handed alpha
Helix 20
AC2
A
653 662Right-handed alpha
Helix 21
AC3
A
663 667Right-handed 310
Helix 22
AC4
A
669 689Right-handed alpha
Helix 23
AC5
A
692 707Right-handed alpha
Helix 24
AC6
A
707 714Right-handed alpha
Helix 25
AC7
A
721 738Right-handed alpha
Helix 26
AC8
A
740 757Right-handed alpha
Helix 27
AC9
A
764 776Right-handed alpha
Helix 28
AD1
A
778 790Right-handed alpha
Helix 29
AD2
A
794 806Right-handed alpha
Helix 30
AD3
A
810 824Right-handed alpha
Helix 31
AD4
A
828 830Right-handed 310
Helix 32
AD5
A
831 841Right-handed alpha
Helix 33
AD6
A
845 856Right-handed alpha
Helix 34
AD7
A
856 865Right-handed alpha
Helix 35
AD8
A
868 880Right-handed alpha
Helix 36
AD9
A
884 897Right-handed alpha
Helix 37
AE1
A
898 902Right-handed 310
Helix 38
AE2
A
905 936Right-handed alpha
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There are 8 sheets in PDB entry 6RYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
101 108anti-parallel
Strand 3
A
145 154anti-parallel
Strand 4
A
75 86anti-parallel
Strand 5
A
58 70anti-parallel
Strand 6
A
202 209parallel
Strand 7
A
231 236anti-parallel
Strand 8
A
221 228anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
121 125anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 168first strand
Strand 2
A
174 181anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
249 252anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
305 311parallel
Strand 4
A
324 328parallel
Strand 5
A
318 319anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
471 473parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 590first strand
Strand 2
A
541 548anti-parallel
Strand 3
A
531 538anti-parallel
Strand 4
A
609 612parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 582first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
598 600anti-parallel
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