Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RYR entry

There are 11 chains in PDB entry 6RYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LYS 16	GLY 102
C	THR 16	LYS 118
D	LYS 28	LYS 122
E	HIS 39	ALA 135
F	ASN 25	GLY 102
G	ALA 14	LYS 118
H	THR 29	ALA 121
I	A -72	C 76
J	G -76	T 72
W	ASP 446	UNK 1212

There are 67 helices in PDB entry 6RYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	130	Right-handed alpha
Helix 5	AA5	B	30	41	Right-handed alpha
Helix 6	AA6	B	50	76	Right-handed alpha
Helix 7	AA7	B	82	92	Right-handed alpha
Helix 8	AA8	C	17	21	Right-handed alpha
Helix 9	AA9	C	26	37	Right-handed alpha
Helix 10	AB1	C	45	73	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	90	97	Right-handed alpha
Helix 13	AB4	D	35	46	Right-handed alpha
Helix 14	AB5	D	52	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	102	121	Right-handed alpha
Helix 17	AB8	E	44	55	Right-handed alpha
Helix 18	AB9	E	63	77	Right-handed alpha
Helix 19	AC1	E	85	114	Right-handed alpha
Helix 20	AC2	E	120	131	Right-handed alpha
Helix 21	AC3	F	25	29	Right-handed 310
Helix 22	AC4	F	30	41	Right-handed alpha
Helix 23	AC5	F	49	75	Right-handed alpha
Helix 24	AC6	F	82	93	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	27	37	Right-handed alpha
Helix 27	AC9	G	46	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	90	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	100	121	Right-handed alpha
Helix 34	AD7	W	551	555	Right-handed 310
Helix 35	AD8	W	560	566	Right-handed alpha
Helix 36	AD9	W	567	578	Right-handed alpha
Helix 37	AE1	W	593	599	Right-handed alpha
Helix 38	AE2	W	602	612	Right-handed alpha
Helix 39	AE3	W	613	616	Right-handed 310
Helix 40	AE4	W	618	622	Right-handed 310
Helix 41	AE5	W	648	652	Right-handed 310
Helix 42	AE6	W	663	678	Right-handed alpha
Helix 43	AE7	W	716	721	Right-handed alpha
Helix 44	AE8	W	727	743	Right-handed alpha
Helix 45	AE9	W	756	772	Right-handed alpha
Helix 46	AF1	W	783	785	Right-handed 310
Helix 47	AF2	W	786	791	Right-handed alpha
Helix 48	AF3	W	809	821	Right-handed alpha
Helix 49	AF4	W	852	858	Right-handed alpha
Helix 50	AF5	W	862	866	Right-handed 310
Helix 51	AF6	W	875	878	Right-handed 310
Helix 52	AF7	W	883	892	Right-handed alpha
Helix 53	AF8	W	909	920	Right-handed alpha
Helix 54	AF9	W	927	931	Right-handed 310
Helix 55	AG1	W	938	950	Right-handed alpha
Helix 56	AG2	W	979	991	Right-handed alpha
Helix 57	AG3	W	993	998	Right-handed alpha
Helix 58	AG4	W	1010	1021	Right-handed alpha
Helix 59	AG5	W	1022	1024	Right-handed 310
Helix 60	AG6	W	1025	1031	Right-handed alpha
Helix 61	AG7	W	1041	1048	Right-handed alpha
Helix 62	AG8	W	1049	1066	Right-handed alpha
Helix 63	AG9	W	1077	1090	Right-handed alpha
Helix 64	AH1	W	1101	1113	Right-handed alpha
Helix 65	AH2	W	1150	1158	Right-handed alpha
Helix 66	AH3	W	1179	1192	Right-handed alpha
Helix 67	AH4	W	1202	1210	Right-handed alpha

There are 16 sheets in PDB entry 6RYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	462	463	first strand
Strand 2	W	470	471	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	502	510	first strand
Strand 2	W	541	547	anti-parallel
Strand 3	W	556	559	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	624	631	first strand
Strand 2	W	639	644	anti-parallel
Strand 3	W	653	655	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	747	748	first strand
Strand 2	W	897	900	parallel
Strand 3	W	869	873	parallel
Strand 4	W	778	782	parallel
Strand 5	W	847	851	parallel
Strand 6	W	803	806	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	969	976	first strand
Strand 2	W	1169	1176	parallel
Strand 3	W	1140	1143	parallel
Strand 4	W	1069	1072	parallel
Strand 5	W	1121	1124	parallel
Strand 6	W	1093	1095	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	1034	1035	first strand
Strand 2	W	1039	1040	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYR