Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RYU entry

There are 12 chains in PDB entry 6RYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LYS 16	GLY 102
C	THR 16	LYS 118
D	LYS 28	LYS 122
E	HIS 39	ALA 135
F	LYS 16	GLY 102
G	ALA 14	LYS 118
H	THR 29	ALA 121
I	A -72	C 76
J	G -76	T 72
W	ASP 446	UNK 1416
V	ASP 446	UNK 1416

There are 92 helices in PDB entry 6RYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	107	Right-handed alpha
Helix 4	AA4	A	107	114	Right-handed alpha
Helix 5	AA5	A	121	131	Right-handed alpha
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	53	76	Right-handed alpha
Helix 8	AA8	B	83	91	Right-handed alpha
Helix 9	AA9	C	17	21	Right-handed alpha
Helix 10	AB1	C	26	36	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	91	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	100	121	Right-handed alpha
Helix 18	AB9	E	46	55	Right-handed alpha
Helix 19	AC1	E	63	74	Right-handed alpha
Helix 20	AC2	E	87	95	Right-handed alpha
Helix 21	AC3	E	96	114	Right-handed alpha
Helix 22	AC4	E	120	131	Right-handed alpha
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	53	76	Right-handed alpha
Helix 25	AC7	F	83	91	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	27	36	Right-handed alpha
Helix 28	AD1	G	46	73	Right-handed alpha
Helix 29	AD2	G	79	88	Right-handed alpha
Helix 30	AD3	G	90	95	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	120	Right-handed alpha
Helix 35	AD8	W	559	564	Right-handed alpha
Helix 36	AD9	W	567	578	Right-handed alpha
Helix 37	AE1	W	598	601	Right-handed 310
Helix 38	AE2	W	602	610	Right-handed alpha
Helix 39	AE3	W	648	652	Right-handed 310
Helix 40	AE4	W	664	678	Right-handed alpha
Helix 41	AE5	W	719	723	Right-handed 310
Helix 42	AE6	W	728	743	Right-handed alpha
Helix 43	AE7	W	758	771	Right-handed alpha
Helix 44	AE8	W	786	798	Right-handed alpha
Helix 45	AE9	W	809	820	Right-handed alpha
Helix 46	AF1	W	852	858	Right-handed alpha
Helix 47	AF2	W	874	880	Right-handed 310
Helix 48	AF3	W	883	891	Right-handed alpha
Helix 49	AF4	W	909	920	Right-handed alpha
Helix 50	AF5	W	927	933	Right-handed alpha
Helix 51	AF6	W	943	948	Right-handed alpha
Helix 52	AF7	W	979	991	Right-handed alpha
Helix 53	AF8	W	1010	1015	Right-handed alpha
Helix 54	AF9	W	1021	1024	Right-handed 310
Helix 55	AG1	W	1025	1030	Right-handed alpha
Helix 56	AG2	W	1043	1049	Right-handed alpha
Helix 57	AG3	W	1050	1065	Right-handed alpha
Helix 58	AG4	W	1075	1090	Right-handed alpha
Helix 59	AG5	W	1101	1113	Right-handed alpha
Helix 60	AG6	W	1150	1158	Right-handed alpha
Helix 61	AG7	W	1180	1191	Right-handed alpha
Helix 62	AG8	W	1196	1200	Right-handed 310
Helix 63	AG9	W	1407	1414	Right-handed alpha
Helix 64	AH1	V	559	564	Right-handed alpha
Helix 65	AH2	V	567	578	Right-handed alpha
Helix 66	AH3	V	598	601	Right-handed 310
Helix 67	AH4	V	602	610	Right-handed alpha
Helix 68	AH5	V	648	652	Right-handed 310
Helix 69	AH6	V	664	678	Right-handed alpha
Helix 70	AH7	V	719	723	Right-handed 310
Helix 71	AH8	V	728	744	Right-handed alpha
Helix 72	AH9	V	758	771	Right-handed alpha
Helix 73	AI1	V	786	798	Right-handed alpha
Helix 74	AI2	V	809	820	Right-handed alpha
Helix 75	AI3	V	852	858	Right-handed alpha
Helix 76	AI4	V	874	880	Right-handed 310
Helix 77	AI5	V	883	891	Right-handed alpha
Helix 78	AI6	V	909	920	Right-handed alpha
Helix 79	AI7	V	927	933	Right-handed alpha
Helix 80	AI8	V	943	948	Right-handed alpha
Helix 81	AI9	V	979	991	Right-handed alpha
Helix 82	AJ1	V	1010	1015	Right-handed alpha
Helix 83	AJ2	V	1021	1024	Right-handed 310
Helix 84	AJ3	V	1025	1030	Right-handed alpha
Helix 85	AJ4	V	1043	1049	Right-handed alpha
Helix 86	AJ5	V	1050	1065	Right-handed alpha
Helix 87	AJ6	V	1075	1090	Right-handed alpha
Helix 88	AJ7	V	1101	1113	Right-handed alpha
Helix 89	AJ8	V	1150	1158	Right-handed alpha
Helix 90	AJ9	V	1180	1191	Right-handed alpha
Helix 91	AK1	V	1196	1200	Right-handed 310
Helix 92	AK2	V	1407	1414	Right-handed alpha

There are 16 sheets in PDB entry 6RYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	462	463	first strand
Strand 2	W	470	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	502	510	first strand
Strand 2	W	541	547	anti-parallel
Strand 3	W	557	558	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	624	631	first strand
Strand 2	W	639	644	anti-parallel
Strand 3	W	653	655	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	747	750	first strand
Strand 2	W	898	901	parallel
Strand 3	W	869	872	parallel
Strand 4	W	778	781	parallel
Strand 5	W	847	850	parallel
Strand 6	W	803	805	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	969	976	first strand
Strand 2	W	1169	1176	parallel
Strand 3	W	1140	1143	parallel
Strand 4	W	1069	1073	parallel
Strand 5	W	1121	1125	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	462	463	first strand
Strand 2	V	470	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	502	510	first strand
Strand 2	V	541	547	anti-parallel
Strand 3	V	557	558	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	624	631	first strand
Strand 2	V	639	644	anti-parallel
Strand 3	V	653	655	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	747	750	first strand
Strand 2	V	898	901	parallel
Strand 3	V	869	872	parallel
Strand 4	V	778	781	parallel
Strand 5	V	847	850	parallel
Strand 6	V	803	805	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	969	976	first strand
Strand 2	V	1169	1176	parallel
Strand 3	V	1140	1143	parallel
Strand 4	V	1069	1073	parallel
Strand 5	V	1121	1125	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYU