Analysis of interatomic Contacts of Structural Units in PDB entry:
6RYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RYV entry

There is 1 chain in PDB entry 6RYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10GLY 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6RYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
141 151Right-handed alpha
Helix 3
AA3
A
196 201Right-handed alpha
Helix 4
AA4
A
299 302Right-handed 310
Helix 5
AA5
A
361 365Right-handed 310
Helix 6
AA6
A
371 376Right-handed alpha
Helix 7
AA7
A
385 387Right-handed 310
Helix 8
AA8
A
430 432Right-handed 310
Helix 9
AA9
A
566 570Right-handed 310
Helix 10
AB1
A
579 583Right-handed 310
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There are 12 sheets in PDB entry 6RYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
120 129anti-parallel
Strand 3
A
179 190anti-parallel
Strand 4
A
157 161anti-parallel
Strand 5
A
166 170anti-parallel
Strand 6
A
132 136anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
573 578anti-parallel
Strand 3
A
207 208anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
573 578anti-parallel
Strand 3
A
545 549anti-parallel
Strand 4
A
535 539anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
215 219anti-parallel
Strand 5
A
629 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
553 554parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
283 286anti-parallel
Strand 3
A
294 297anti-parallel
Strand 4
A
304 307anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
344 347anti-parallel
Strand 4
A
352 355anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
397 404anti-parallel
Strand 4
A
407 414anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 429first strand
Strand 2
A
434 438anti-parallel
Strand 3
A
453 457anti-parallel
Strand 4
A
466 470anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
498 499anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 484first strand
Strand 2
A
490 496anti-parallel
Strand 3
A
510 515anti-parallel
Strand 4
A
520 526anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 604first strand
Strand 2
A
683 688parallel
Strand 3
A
666 672anti-parallel
Strand 4
A
622 626anti-parallel
Strand 5
A
640 642anti-parallel
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