Analysis of interatomic Contacts of Structural Units in PDB entry:
6RZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RZD entry

There are 2 chains in PDB entry 6RZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6PRO 502
B
 ILE 6PRO 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 6RZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 22Right-handed alpha
Helix 2
AA2
A
28 38Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
85 105Right-handed alpha
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
145 150Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
163 168Right-handed 310
Helix 9
AA9
A
173 191Right-handed alpha
Helix 10
AB1
A
211 238Right-handed alpha
Helix 11
AB2
A
250 257Right-handed alpha
Helix 12
AB3
A
260 267Right-handed alpha
Helix 13
AB4
A
287 295Right-handed alpha
Helix 14
AB5
A
323 338Right-handed alpha
Helix 15
AB6
A
356 358Right-handed 310
Helix 16
AB7
A
359 364Right-handed alpha
Helix 17
AB8
A
369 374Right-handed alpha
Helix 18
AB9
A
472 476Right-handed 310
Helix 19
AC1
B
16 22Right-handed alpha
Helix 20
AC2
B
28 38Right-handed alpha
Helix 21
AC3
B
78 83Right-handed alpha
Helix 22
AC4
B
85 105Right-handed alpha
Helix 23
AC5
B
108 120Right-handed alpha
Helix 24
AC6
B
145 151Right-handed alpha
Helix 25
AC7
B
152 155Right-handed 310
Helix 26
AC8
B
163 168Right-handed 310
Helix 27
AC9
B
173 191Right-handed alpha
Helix 28
AD1
B
211 238Right-handed alpha
Helix 29
AD2
B
250 257Right-handed alpha
Helix 30
AD3
B
260 267Right-handed alpha
Helix 31
AD4
B
287 296Right-handed alpha
Helix 32
AD5
B
323 337Right-handed alpha
Helix 33
AD6
B
356 358Right-handed 310
Helix 34
AD7
B
359 365Right-handed alpha
Helix 35
AD8
B
369 374Right-handed alpha
Helix 36
AD9
B
472 476Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6RZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
44 49parallel
Strand 3
A
123 129parallel
Strand 4
A
195 199parallel
Strand 5
A
242 247parallel
Strand 6
A
272 275parallel
Strand 7
A
301 306parallel
Strand 8
A
341 344parallel
Strand 9
A
9 13parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
491 501anti-parallel
Strand 3
A
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
491 501anti-parallel
Strand 3
A
422 430anti-parallel
Strand 4
A
466 470anti-parallel
Strand 5
A
450 454anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 413first strand
Strand 2
A
480 487anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
447 448anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
44 49parallel
Strand 3
B
123 129parallel
Strand 4
B
195 199parallel
Strand 5
B
242 247parallel
Strand 6
B
272 275parallel
Strand 7
B
301 306parallel
Strand 8
B
342 344parallel
Strand 9
B
9 13parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
491 501anti-parallel
Strand 3
B
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
491 501anti-parallel
Strand 3
B
422 430anti-parallel
Strand 4
B
466 470anti-parallel
Strand 5
B
450 454anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 413first strand
Strand 2
B
480 487anti-parallel
Strand 3
B
440 444anti-parallel
Strand 4
B
447 448anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il