Analysis of interatomic Contacts of Structural Units in PDB entry:
6S09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S09 entry

There are 5 chains in PDB entry 6S09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ALA 1ALA 166
A
 ALA 1ALA 166
B
 ALA 1ALA 166
C
 ALA 1THR 164
D
 ALA 1LEU 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6S09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
6 10Right-handed alpha
Helix 2
AA2
F
22 24Right-handed 310
Helix 3
AA3
F
144 146Right-handed 310
Helix 4
AA4
A
6 10Right-handed alpha
Helix 5
AA5
A
22 25Right-handed 310
Helix 6
AA6
B
22 24Right-handed 310
Helix 7
AA7
C
6 10Right-handed alpha
Helix 8
AA8
C
22 24Right-handed 310
Helix 9
AA9
D
6 10Right-handed alpha
Helix 10
AB1
D
22 24Right-handed 310
Helix 11
AB2
E
22 24Right-handed 310
Helix 12
AB3
G
6 10Right-handed alpha
Helix 13
AB4
G
22 24Right-handed 310
Helix 14
AB5
H
22 25Right-handed 310
Back to top of page

There are 30 sheets in PDB entry 6S09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
34 43anti-parallel
Strand 3
F
109 126anti-parallel
Strand 4
F
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 15first strand
Strand 2
F
153 158parallel
Strand 3
F
132 142anti-parallel
Strand 4
F
48 56anti-parallel
Strand 5
F
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 15first strand
Strand 2
F
153 158parallel
Strand 3
F
132 142anti-parallel
Strand 4
F
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
18 20first strand
Strand 2
F
161 163parallel
Strand 3
F
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
59 61first strand
Strand 2
F
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
109 126anti-parallel
Strand 4
A
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
153 158parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
50 56anti-parallel
Strand 5
A
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
153 158parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
50 56anti-parallel
Strand 5
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
161 163parallel
Strand 3
A
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
34 43anti-parallel
Strand 3
B
109 126anti-parallel
Strand 4
B
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
153 158parallel
Strand 3
B
132 140anti-parallel
Strand 4
B
50 56anti-parallel
Strand 5
B
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
161 163parallel
Strand 3
B
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
34 43anti-parallel
Strand 3
C
109 126anti-parallel
Strand 4
C
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 15first strand
Strand 2
C
153 158parallel
Strand 3
C
132 141anti-parallel
Strand 4
C
50 56anti-parallel
Strand 5
C
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
161 163parallel
Strand 3
C
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
34 43anti-parallel
Strand 3
D
109 121anti-parallel
Strand 4
D
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
152 157parallel
Strand 3
D
132 141anti-parallel
Strand 4
D
50 56anti-parallel
Strand 5
D
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
152 157parallel
Strand 3
D
132 141anti-parallel
Strand 4
D
50 56anti-parallel
Strand 5
D
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 20first strand
Strand 2
D
161 163parallel
Strand 3
D
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 5first strand
Strand 2
E
34 43anti-parallel
Strand 3
E
109 121anti-parallel
Strand 4
E
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
153 158parallel
Strand 3
E
132 141anti-parallel
Strand 4
E
50 56anti-parallel
Strand 5
E
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
153 158parallel
Strand 3
E
132 141anti-parallel
Strand 4
E
50 56anti-parallel
Strand 5
E
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 20first strand
Strand 2
E
161 163parallel
Strand 3
E
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
4 5first strand
Strand 2
G
34 43anti-parallel
Strand 3
G
109 126anti-parallel
Strand 4
G
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 15first strand
Strand 2
G
153 158parallel
Strand 3
G
132 141anti-parallel
Strand 4
G
50 56anti-parallel
Strand 5
G
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 15first strand
Strand 2
G
153 158parallel
Strand 3
G
132 141anti-parallel
Strand 4
G
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
18 20first strand
Strand 2
G
161 163parallel
Strand 3
G
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 5first strand
Strand 2
H
34 43anti-parallel
Strand 3
H
109 121anti-parallel
Strand 4
H
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 14first strand
Strand 2
H
153 157parallel
Strand 3
H
132 141anti-parallel
Strand 4
H
50 56anti-parallel
Strand 5
H
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 20first strand
Strand 2
H
161 163parallel
Strand 3
H
128 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il