Analysis of interatomic Contacts of Structural Units in PDB entry:
6S0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S0D entry

There are 4 chains in PDB entry 6S0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1TYR 127
A
 LYS 129GLN 194
C
 MET 0TYR 127
C
 LYS 129ARG 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6S0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
29 52Right-handed alpha
Helix 3
AA3
A
53 60Right-handed alpha
Helix 4
AA4
A
60 80Right-handed alpha
Helix 5
AA5
A
89 101Right-handed alpha
Helix 6
AA6
A
102 116Right-handed alpha
Helix 7
AA7
A
157 160Right-handed 310
Helix 8
AA8
A
161 166Right-handed alpha
Helix 9
AA9
A
168 177Right-handed alpha
Helix 10
AB1
A
178 180Right-handed 310
Helix 11
AB2
A
181 194Right-handed alpha
Helix 12
AB3
C
19 29Right-handed alpha
Helix 13
AB4
C
29 52Right-handed alpha
Helix 14
AB5
C
53 60Right-handed alpha
Helix 15
AB6
C
60 80Right-handed alpha
Helix 16
AB7
C
89 101Right-handed alpha
Helix 17
AB8
C
102 116Right-handed alpha
Helix 18
AB9
C
157 160Right-handed 310
Helix 19
AC1
C
161 166Right-handed alpha
Helix 20
AC2
C
168 177Right-handed alpha
Helix 21
AC3
C
178 180Right-handed 310
Helix 22
AC4
C
181 193Right-handed alpha
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There are 2 sheets in PDB entry 6S0D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 140first strand
Strand 2
A
121 128anti-parallel
Strand 3
A
149 155anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 140first strand
Strand 2
C
121 128anti-parallel
Strand 3
C
149 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il