Analysis of interatomic Contacts of Structural Units in PDB entry:
6S0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S0M entry

There are 3 chains in PDB entry 6S0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 160
B
 MET 1SER 158
C
 G 211 G 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6S0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 43Right-handed 310
Helix 2
AA2
A
44 51Right-handed alpha
Helix 3
AA3
A
52 55Right-handed 310
Helix 4
AA4
A
65 77Right-handed alpha
Helix 5
AA5
A
92 101Right-handed alpha
Helix 6
AA6
A
102 104Right-handed 310
Helix 7
AA7
A
105 109Right-handed 310
Helix 8
AA8
A
120 127Right-handed alpha
Helix 9
AA9
A
141 158Right-handed alpha
Helix 10
AB1
B
39 43Right-handed 310
Helix 11
AB2
B
44 51Right-handed alpha
Helix 12
AB3
B
52 55Right-handed 310
Helix 13
AB4
B
65 77Right-handed alpha
Helix 14
AB5
B
92 101Right-handed alpha
Helix 15
AB6
B
105 109Right-handed 310
Helix 16
AB7
B
120 127Right-handed alpha
Helix 17
AB8
B
141 157Right-handed alpha
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There are 2 sheets in PDB entry 6S0M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
30 35parallel
Strand 3
A
16 25anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
86 89parallel
Strand 6
A
118 119parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
30 35parallel
Strand 3
B
16 25anti-parallel
Strand 4
B
2 11anti-parallel
Strand 5
B
86 89parallel
Strand 6
B
118 119parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il