Analysis of interatomic Contacts of Structural Units in PDB entry:
6S1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S1C entry

There are 8 chains in PDB entry 6S1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 29	ALA 524
E	ASN 29	ALA 524
B	SER 2	ARG 380
C	PRO 2	ILE 132
D	ILE 718	GLU 741
F	SER 2	ARG 380
G	PRO 2	ILE 132
H	ILE 718	GLU 741

There are 59 helices in PDB entry 6S1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	50	Right-handed alpha
Helix 2	AA2	A	145	147	Right-handed 310
Helix 3	AA3	A	148	160	Right-handed alpha
Helix 4	AA4	A	195	213	Right-handed alpha
Helix 5	AA5	A	248	258	Right-handed alpha
Helix 6	AA6	A	354	370	Right-handed alpha
Helix 7	AA7	A	382	394	Right-handed alpha
Helix 8	AA8	A	397	403	Right-handed alpha
Helix 9	AA9	A	422	430	Right-handed alpha
Helix 10	AB1	A	433	437	Right-handed 310
Helix 11	AB2	A	438	447	Right-handed alpha
Helix 12	AB3	A	455	457	Right-handed 310
Helix 13	AB4	A	458	466	Right-handed alpha
Helix 14	AB5	A	466	488	Right-handed alpha
Helix 15	AB6	A	488	498	Right-handed alpha
Helix 16	AB7	A	503	510	Right-handed alpha
Helix 17	AB8	A	511	524	Right-handed alpha
Helix 18	AB9	E	30	50	Right-handed alpha
Helix 19	AC1	E	150	160	Right-handed alpha
Helix 20	AC2	E	195	205	Right-handed alpha
Helix 21	AC3	E	248	258	Right-handed alpha
Helix 22	AC4	E	354	370	Right-handed alpha
Helix 23	AC5	E	382	394	Right-handed alpha
Helix 24	AC6	E	397	403	Right-handed alpha
Helix 25	AC7	E	422	430	Right-handed alpha
Helix 26	AC8	E	433	437	Right-handed 310
Helix 27	AC9	E	438	448	Right-handed alpha
Helix 28	AD1	E	455	457	Right-handed 310
Helix 29	AD2	E	458	466	Right-handed alpha
Helix 30	AD3	E	466	488	Right-handed alpha
Helix 31	AD4	E	488	498	Right-handed alpha
Helix 32	AD5	E	503	510	Right-handed alpha
Helix 33	AD6	E	511	524	Right-handed alpha
Helix 34	AD7	B	21	29	Right-handed alpha
Helix 35	AD8	B	146	151	Right-handed alpha
Helix 36	AD9	B	158	168	Right-handed alpha
Helix 37	AE1	B	181	199	Right-handed alpha
Helix 38	AE2	B	207	216	Right-handed alpha
Helix 39	AE3	B	227	238	Right-handed alpha
Helix 40	AE4	B	253	270	Right-handed alpha
Helix 41	AE5	B	277	287	Right-handed alpha
Helix 42	AE6	B	324	336	Right-handed alpha
Helix 43	AE7	B	340	345	Right-handed alpha
Helix 44	AE8	B	357	366	Right-handed alpha
Helix 45	AE9	C	8	18	Right-handed alpha
Helix 46	AF1	C	44	52	Right-handed alpha
Helix 47	AF2	D	735	740	Right-handed alpha
Helix 48	AF3	F	21	29	Right-handed alpha
Helix 49	AF4	F	146	151	Right-handed alpha
Helix 50	AF5	F	158	168	Right-handed alpha
Helix 51	AF6	F	181	199	Right-handed alpha
Helix 52	AF7	F	253	270	Right-handed alpha
Helix 53	AF8	F	277	287	Right-handed alpha
Helix 54	AF9	F	324	336	Right-handed alpha
Helix 55	AG1	F	340	345	Right-handed alpha
Helix 56	AG2	F	357	366	Right-handed alpha
Helix 57	AG3	G	8	18	Right-handed alpha
Helix 58	AG4	G	44	52	Right-handed alpha
Helix 59	AG5	H	735	740	Right-handed alpha

There are 17 sheets in PDB entry 6S1C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	114	122	anti-parallel
Strand 3	A	78	87	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	164	168	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	271	274	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	421	first strand
Strand 2	A	373	376	parallel
Strand 3	A	286	293	parallel
Strand 4	A	308	315	anti-parallel
Strand 5	A	318	324	anti-parallel
Strand 6	A	347	352	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	412	414	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	264	268	anti-parallel
Strand 3	E	74	87	anti-parallel
Strand 4	E	114	122	anti-parallel
Strand 5	E	128	134	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	421	first strand
Strand 2	E	373	376	parallel
Strand 3	E	286	293	parallel
Strand 4	E	308	315	anti-parallel
Strand 5	E	318	324	anti-parallel
Strand 6	E	347	352	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	96	104	parallel
Strand 3	B	69	74	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	50	52	anti-parallel
Strand 3	B	57	64	anti-parallel
Strand 4	B	106	112	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	122	125	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	79	84	anti-parallel
Strand 5	C	71	76	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	112	118	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	96	104	parallel
Strand 3	F	69	74	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	41	first strand
Strand 2	F	49	52	anti-parallel
Strand 3	F	57	64	anti-parallel
Strand 4	F	106	112	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	121	125	parallel
Strand 3	G	88	96	anti-parallel
Strand 4	G	79	84	anti-parallel
Strand 5	G	71	76	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	65	68	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	107	first strand
Strand 2	G	112	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S1C