Analysis of interatomic Contacts of Structural Units in PDB entry:
6S1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S1M entry

There are 9 chains in PDB entry 6S1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 78TRP 1107
B
MET 1LEU 462
C
ALA 2ALA 144
D
GLU 42LEU 107
E
MET 1ILE 255
F
MET 1ILE 255
G
MET 1ILE 255
P
C 3 G 24
T
T -3 G 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6S1M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
160 169Right-handed alpha
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
216 218Right-handed 310
Helix 4
AA4
A
219 228Right-handed alpha
Helix 5
AA5
A
249 259Right-handed alpha
Helix 6
AA6
A
301 306Right-handed 310
Helix 7
AA7
A
373 389Right-handed alpha
Helix 8
AA8
A
401 413Right-handed alpha
Helix 9
AA9
A
459 467Right-handed alpha
Helix 10
AB1
A
473 482Right-handed alpha
Helix 11
AB2
A
493 499Right-handed alpha
Helix 12
AB3
A
501 526Right-handed alpha
Helix 13
AB4
A
527 540Right-handed alpha
Helix 14
AB5
A
544 548Right-handed 310
Helix 15
AB6
A
551 564Right-handed alpha
Helix 16
AB7
A
605 614Right-handed alpha
Helix 17
AB8
A
617 619Right-handed 310
Helix 18
AB9
A
655 675Right-handed alpha
Helix 19
AC1
A
679 705Right-handed alpha
Helix 20
AC2
A
713 739Right-handed alpha
Helix 21
AC3
A
767 783Right-handed alpha
Helix 22
AC4
A
837 853Right-handed alpha
Helix 23
AC5
A
856 873Right-handed alpha
Helix 24
AC6
A
898 906Right-handed alpha
Helix 25
AC7
A
941 949Right-handed alpha
Helix 26
AC8
A
953 960Right-handed alpha
Helix 27
AC9
A
962 971Right-handed alpha
Helix 28
AD1
A
976 988Right-handed alpha
Helix 29
AD2
A
1001 1005Right-handed 310
Helix 30
AD3
A
1033 1056Right-handed alpha
Helix 31
AD4
A
1056 1063Right-handed alpha
Helix 32
AD5
A
1080 1096Right-handed alpha
Helix 33
AD6
B
4 8Right-handed 310
Helix 34
AD7
B
36 40Right-handed 310
Helix 35
AD8
B
50 74Right-handed alpha
Helix 36
AD9
B
209 223Right-handed alpha
Helix 37
AE1
B
228 236Right-handed alpha
Helix 38
AE2
B
272 288Right-handed alpha
Helix 39
AE3
B
312 316Right-handed 310
Helix 40
AE4
B
318 322Right-handed 310
Helix 41
AE5
B
347 355Right-handed alpha
Helix 42
AE6
B
360 371Right-handed alpha
Helix 43
AE7
C
3 15Right-handed alpha
Helix 44
AE8
C
24 30Right-handed alpha
Helix 45
AE9
C
33 52Right-handed alpha
Helix 46
AF1
C
84 92Right-handed alpha
Helix 47
AF2
C
112 124Right-handed alpha
Helix 48
AF3
D
44 53Right-handed alpha
Helix 49
AF4
D
65 77Right-handed alpha
Helix 50
AF5
E
9 20Right-handed alpha
Helix 51
AF6
E
55 57Right-handed 310
Helix 52
AF7
E
72 80Right-handed alpha
Helix 53
AF8
E
141 152Right-handed alpha
Helix 54
AF9
E
209 216Right-handed alpha
Helix 55
AG1
E
217 222Right-handed 310
Helix 56
AG2
F
9 20Right-handed alpha
Helix 57
AG3
F
55 57Right-handed 310
Helix 58
AG4
F
72 80Right-handed alpha
Helix 59
AG5
F
141 152Right-handed alpha
Helix 60
AG6
F
209 216Right-handed alpha
Helix 61
AG7
F
217 222Right-handed 310
Helix 62
AG8
G
9 20Right-handed alpha
Helix 63
AG9
G
55 57Right-handed 310
Helix 64
AH1
G
72 80Right-handed alpha
Helix 65
AH2
G
141 152Right-handed alpha
Helix 66
AH3
G
209 216Right-handed alpha
Helix 67
AH4
G
217 222Right-handed 310
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There are 21 sheets in PDB entry 6S1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
286 291first strand
Strand 2
A
136 142parallel
Strand 3
A
123 131anti-parallel
Strand 4
A
94 105anti-parallel
Strand 5
A
265 268anti-parallel
Strand 6
A
296 298anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 151first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
192 195anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
367 370first strand
Strand 2
A
351 356parallel
Strand 3
A
334 343anti-parallel
Strand 4
A
311 319anti-parallel
Strand 5
A
392 395parallel
Strand 6
A
455 458parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
431 438first strand
Strand 2
A
442 449anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
592 594first strand
Strand 2
A
792 805anti-parallel
Strand 3
A
598 603anti-parallel
Strand 4
A
758 762anti-parallel
Strand 5
A
750 754anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
592 594first strand
Strand 2
A
792 805anti-parallel
Strand 3
A
808 814anti-parallel
Strand 4
A
824 827anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
621 622first strand
Strand 2
A
645 647anti-parallel
Strand 3
A
637 639anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
883 886first strand
Strand 2
A
921 926anti-parallel
Strand 3
A
939 940anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
992 993first strand
Strand 2
F
120 121parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
141 143first strand
Strand 2
B
132 136anti-parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
158 165anti-parallel
Strand 5
B
171 177anti-parallel
Strand 6
B
145 146parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
325 327first strand
Strand 2
B
292 295parallel
Strand 3
B
238 244parallel
Strand 4
B
195 199parallel
Strand 5
B
436 441anti-parallel
Strand 6
B
447 454anti-parallel
Strand 7
C
73 80parallel
Strand 8
C
58 68anti-parallel
Strand 9
C
97 104anti-parallel
Strand 10
C
21 22anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
332 336first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
401 403parallel
Strand 4
B
422 427parallel
Strand 5
B
411 416anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
87 92anti-parallel
Strand 3
E
98 104anti-parallel
Strand 4
E
110 117anti-parallel
Strand 5
F
176 183anti-parallel
Strand 6
F
166 173anti-parallel
Strand 7
F
157 162anti-parallel
Strand 8
F
203 208anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
25 30first strand
Strand 2
E
66 71anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
34 40first strand
Strand 2
E
46 53anti-parallel
Strand 3
E
245 251anti-parallel
Strand 4
E
235 241anti-parallel
Strand 5
E
224 229anti-parallel
Strand 6
E
135 140anti-parallel
Strand 7
E
196 199anti-parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
203 208first strand
Strand 2
E
157 162anti-parallel
Strand 3
E
166 173anti-parallel
Strand 4
E
176 183anti-parallel
Strand 5
G
110 117anti-parallel
Strand 6
G
98 104anti-parallel
Strand 7
G
87 92anti-parallel
Strand 8
G
2 6anti-parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 6first strand
Strand 2
F
87 92anti-parallel
Strand 3
F
98 104anti-parallel
Strand 4
F
110 117anti-parallel
Strand 5
G
176 183anti-parallel
Strand 6
G
166 173anti-parallel
Strand 7
G
157 162anti-parallel
Strand 8
G
203 208anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
25 29first strand
Strand 2
F
67 71anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
34 40first strand
Strand 2
F
46 53anti-parallel
Strand 3
F
245 251anti-parallel
Strand 4
F
235 241anti-parallel
Strand 5
F
224 229anti-parallel
Strand 6
F
135 140anti-parallel
Strand 7
F
196 199anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
25 30first strand
Strand 2
G
66 71anti-parallel
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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
34 40first strand
Strand 2
G
46 53anti-parallel
Strand 3
G
245 251anti-parallel
Strand 4
G
235 241anti-parallel
Strand 5
G
224 229anti-parallel
Strand 6
G
135 140anti-parallel
Strand 7
G
196 199anti-parallel
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