Analysis of interatomic Contacts of Structural Units in PDB entry:
6S29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S29 entry

There are 4 chains in PDB entry 6S29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	GLY 418
B	GLU 56	MET 112
C	GLU 15	GLY 418
D	GLU 56	MET 112

There are 15 helices in PDB entry 6S29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	37	Right-handed alpha
Helix 2	AA2	A	152	154	Right-handed 310
Helix 3	AA3	A	213	217	Right-handed 310
Helix 4	AA4	A	356	358	Right-handed 310
Helix 5	AA5	A	363	368	Right-handed alpha
Helix 6	AA6	A	413	418	Right-handed alpha
Helix 7	AA7	B	78	98	Right-handed alpha
Helix 8	AA8	B	103	112	Right-handed alpha
Helix 9	AA9	C	16	37	Right-handed alpha
Helix 10	AB1	C	152	154	Right-handed 310
Helix 11	AB2	C	356	358	Right-handed 310
Helix 12	AB3	C	363	368	Right-handed alpha
Helix 13	AB4	C	413	418	Right-handed alpha
Helix 14	AB5	D	78	97	Right-handed alpha
Helix 15	AB6	D	103	112	Right-handed alpha

There are 14 sheets in PDB entry 6S29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	390	first strand
Strand 2	A	398	402	anti-parallel
Strand 3	A	406	412	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	B	58	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	64	first strand
Strand 2	A	70	77	anti-parallel
Strand 3	A	87	97	anti-parallel
Strand 4	A	122	130	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	143	150	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	176	178	anti-parallel
Strand 5	A	223	225	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	197	201	anti-parallel
Strand 3	A	207	211	anti-parallel
Strand 4	A	229	231	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	244	first strand
Strand 2	A	247	255	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	275	277	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	A	305	310	anti-parallel
Strand 4	A	319	322	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	333	first strand
Strand 2	A	340	345	anti-parallel
Strand 3	A	350	354	anti-parallel
Strand 4	A	374	378	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	390	first strand
Strand 2	C	398	402	anti-parallel
Strand 3	C	406	412	anti-parallel
Strand 4	C	41	48	anti-parallel
Strand 5	D	57	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	64	first strand
Strand 2	C	70	78	anti-parallel
Strand 3	C	87	97	anti-parallel
Strand 4	C	122	130	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	156	160	anti-parallel
Strand 4	C	176	178	anti-parallel
Strand 5	C	223	225	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	207	211	anti-parallel
Strand 4	C	229	231	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	243	first strand
Strand 2	C	250	255	anti-parallel
Strand 3	C	260	264	anti-parallel
Strand 4	C	275	277	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	289	first strand
Strand 2	C	296	301	anti-parallel
Strand 3	C	306	310	anti-parallel
Strand 4	C	319	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	333	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	350	354	anti-parallel
Strand 4	C	374	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S29

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S29