Analysis of interatomic Contacts of Structural Units in PDB entry:
6S2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S2C entry

There are 2 chains in PDB entry 6S2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 789	SER 1628
B	PRO 789	PHE 1630

There are 53 helices in PDB entry 6S2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	794	799	Right-handed alpha
Helix 2	AA2	A	818	828	Right-handed alpha
Helix 3	AA3	A	913	918	Right-handed alpha
Helix 4	AA4	A	936	940	Right-handed 310
Helix 5	AA5	A	955	967	Right-handed alpha
Helix 6	AA6	A	972	976	Right-handed 310
Helix 7	AA7	A	1031	1035	Right-handed 310
Helix 8	AA8	A	1039	1043	Right-handed 310
Helix 9	AA9	A	1047	1052	Right-handed alpha
Helix 10	AB1	A	1058	1069	Right-handed alpha
Helix 11	AB2	A	1135	1139	Right-handed 310
Helix 12	AB3	A	1170	1178	Right-handed alpha
Helix 13	AB4	A	1183	1198	Right-handed alpha
Helix 14	AB5	A	1200	1216	Right-handed alpha
Helix 15	AB6	A	1272	1280	Right-handed alpha
Helix 16	AB7	A	1293	1297	Right-handed 310
Helix 17	AB8	A	1305	1314	Right-handed alpha
Helix 18	AB9	A	1314	1328	Right-handed alpha
Helix 19	AC1	A	1332	1341	Right-handed alpha
Helix 20	AC2	A	1346	1355	Right-handed alpha
Helix 21	AC3	A	1370	1382	Right-handed alpha
Helix 22	AC4	A	1400	1404	Right-handed 310
Helix 23	AC5	A	1431	1438	Right-handed alpha
Helix 24	AC6	A	1462	1466	Right-handed 310
Helix 25	AC7	A	1472	1476	Right-handed 310
Helix 26	AC8	A	1501	1513	Right-handed alpha
Helix 27	AC9	A	1579	1581	Right-handed 310
Helix 28	AD1	A	1582	1590	Right-handed alpha
Helix 29	AD2	B	794	799	Right-handed alpha
Helix 30	AD3	B	819	827	Right-handed alpha
Helix 31	AD4	B	906	915	Right-handed alpha
Helix 32	AD5	B	917	922	Right-handed 310
Helix 33	AD6	B	935	940	Right-handed alpha
Helix 34	AD7	B	954	968	Right-handed alpha
Helix 35	AD8	B	978	982	Right-handed 310
Helix 36	AD9	B	1059	1069	Right-handed alpha
Helix 37	AE1	B	1097	1100	Right-handed 310
Helix 38	AE2	B	1170	1178	Right-handed alpha
Helix 39	AE3	B	1183	1196	Right-handed alpha
Helix 40	AE4	B	1200	1216	Right-handed alpha
Helix 41	AE5	B	1235	1240	Right-handed alpha
Helix 42	AE6	B	1272	1280	Right-handed alpha
Helix 43	AE7	B	1293	1297	Right-handed 310
Helix 44	AE8	B	1305	1314	Right-handed alpha
Helix 45	AE9	B	1314	1328	Right-handed alpha
Helix 46	AF1	B	1332	1337	Right-handed alpha
Helix 47	AF2	B	1344	1355	Right-handed alpha
Helix 48	AF3	B	1370	1382	Right-handed alpha
Helix 49	AF4	B	1433	1438	Right-handed alpha
Helix 50	AF5	B	1462	1466	Right-handed 310
Helix 51	AF6	B	1501	1510	Right-handed alpha
Helix 52	AF7	B	1582	1590	Right-handed alpha
Helix 53	AF8	B	1620	1624	Right-handed 310

There are 24 sheets in PDB entry 6S2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	863	first strand
Strand 2	A	846	851	anti-parallel
Strand 3	A	1599	1601	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	989	990	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	997	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	877	first strand
Strand 2	A	880	883	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1102	1103	first strand
Strand 2	A	891	896	parallel
Strand 3	A	1266	1269	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1025	1028	first strand
Strand 2	A	1109	1113	parallel
Strand 3	A	1044	1045	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1218	1219	first strand
Strand 2	A	1241	1242	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1223	first strand
Strand 2	A	1538	1539	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1388	1391	first strand
Strand 2	A	1396	1399	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1468	1469	first strand
Strand 2	A	1481	1482	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	816	first strand
Strand 2	B	1383	1384	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	864	first strand
Strand 2	B	845	851	anti-parallel
Strand 3	B	1599	1600	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	871	872	first strand
Strand 2	B	1091	1096	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	989	990	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	871	872	first strand
Strand 2	B	1091	1096	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	997	1000	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	877	first strand
Strand 2	B	880	883	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	891	892	first strand
Strand 2	B	1102	1103	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	905	first strand
Strand 2	B	1284	1285	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1029	first strand
Strand 2	B	1109	1113	parallel
Strand 3	B	1044	1045	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1218	1219	first strand
Strand 2	B	1241	1242	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1224	first strand
Strand 2	B	1537	1539	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1358	1359	first strand
Strand 2	B	1364	1365	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1388	1391	first strand
Strand 2	B	1396	1399	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1468	1469	first strand
Strand 2	B	1481	1482	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1477	1478	first strand
Strand 2	B	1575	1578	anti-parallel
Strand 3	B	1518	1519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S2C