Analysis of interatomic Contacts of Structural Units in PDB entry:
6S2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S2K entry

There are 2 chains in PDB entry 6S2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ALA 523
B
 LEU 5ALA 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6S2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed alpha
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
35 51Right-handed alpha
Helix 4
AA4
A
84 103Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
116 129Right-handed alpha
Helix 7
AA7
A
144 152Right-handed alpha
Helix 8
AA8
A
155 170Right-handed alpha
Helix 9
AA9
A
213 219Right-handed alpha
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
233 245Right-handed alpha
Helix 12
AB3
A
255 272Right-handed alpha
Helix 13
AB4
A
278 292Right-handed alpha
Helix 14
AB5
A
299 315Right-handed alpha
Helix 15
AB6
A
320 333Right-handed alpha
Helix 16
AB7
A
335 351Right-handed alpha
Helix 17
AB8
A
356 358Right-handed 310
Helix 18
AB9
A
359 372Right-handed alpha
Helix 19
AC1
A
372 386Right-handed alpha
Helix 20
AC2
A
408 427Right-handed alpha
Helix 21
AC3
A
436 447Right-handed alpha
Helix 22
AC4
A
450 456Right-handed alpha
Helix 23
AC5
A
497 502Right-handed alpha
Helix 24
AC6
A
513 521Right-handed alpha
Helix 25
AC7
B
6 11Right-handed alpha
Helix 26
AC8
B
17 30Right-handed alpha
Helix 27
AC9
B
35 51Right-handed alpha
Helix 28
AD1
B
84 101Right-handed alpha
Helix 29
AD2
B
102 103Right-handed 310
Helix 30
AD3
B
104 108Right-handed 310
Helix 31
AD4
B
116 129Right-handed alpha
Helix 32
AD5
B
144 152Right-handed alpha
Helix 33
AD6
B
155 170Right-handed alpha
Helix 34
AD7
B
213 219Right-handed alpha
Helix 35
AD8
B
221 228Right-handed 310
Helix 36
AD9
B
233 244Right-handed alpha
Helix 37
AE1
B
257 272Right-handed alpha
Helix 38
AE2
B
278 292Right-handed alpha
Helix 39
AE3
B
299 315Right-handed alpha
Helix 40
AE4
B
320 333Right-handed alpha
Helix 41
AE5
B
335 351Right-handed alpha
Helix 42
AE6
B
356 358Right-handed 310
Helix 43
AE7
B
359 372Right-handed alpha
Helix 44
AE8
B
372 386Right-handed alpha
Helix 45
AE9
B
408 427Right-handed alpha
Helix 46
AF1
B
435 437Right-handed 310
Helix 47
AF2
B
438 447Right-handed alpha
Helix 48
AF3
B
450 456Right-handed alpha
Helix 49
AF4
B
497 502Right-handed alpha
Helix 50
AF5
B
513 521Right-handed alpha
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There are 4 sheets in PDB entry 6S2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
176 179anti-parallel
Strand 4
A
230 231anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
492 494parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
184 188anti-parallel
Strand 3
B
176 179anti-parallel
Strand 4
B
230 231anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
492 494parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il