Analysis of interatomic Contacts of Structural Units in PDB entry:
6S2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S2V entry

There are 3 chains in PDB entry 6S2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 9HIS 354
B
 GLY 7MET 353
C
 ALA 0ARG 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6S2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
50 63Right-handed alpha
Helix 4
AA4
A
66 76Right-handed alpha
Helix 5
AA5
A
85 94Right-handed alpha
Helix 6
AA6
A
94 102Right-handed alpha
Helix 7
AA7
A
110 116Right-handed alpha
Helix 8
AA8
A
124 153Right-handed alpha
Helix 9
AA9
A
154 157Right-handed 310
Helix 10
AB1
A
158 172Right-handed alpha
Helix 11
AB2
A
172 180Right-handed alpha
Helix 12
AB3
A
182 198Right-handed alpha
Helix 13
AB4
A
198 233Right-handed alpha
Helix 14
AB5
A
234 240Right-handed alpha
Helix 15
AB6
A
252 264Right-handed alpha
Helix 16
AB7
A
288 310Right-handed alpha
Helix 17
AB8
A
339 341Right-handed 310
Helix 18
AB9
B
8 12Right-handed 310
Helix 19
AC1
B
14 19Right-handed 310
Helix 20
AC2
B
20 38Right-handed alpha
Helix 21
AC3
B
48 50Right-handed 310
Helix 22
AC4
B
51 63Right-handed alpha
Helix 23
AC5
B
66 73Right-handed alpha
Helix 24
AC6
B
100 105Right-handed alpha
Helix 25
AC7
B
139 153Right-handed alpha
Helix 26
AC8
B
154 157Right-handed 310
Helix 27
AC9
B
158 172Right-handed alpha
Helix 28
AD1
B
172 180Right-handed alpha
Helix 29
AD2
B
184 198Right-handed alpha
Helix 30
AD3
B
198 216Right-handed alpha
Helix 31
AD4
B
216 234Right-handed alpha
Helix 32
AD5
B
234 239Right-handed alpha
Helix 33
AD6
B
252 263Right-handed alpha
Helix 34
AD7
B
266 271Right-handed alpha
Helix 35
AD8
B
287 310Right-handed alpha
Helix 36
AD9
B
339 341Right-handed 310
Helix 37
AE1
C
8 13Right-handed alpha
Helix 38
AE2
C
14 17Right-handed 310
Helix 39
AE3
C
22 38Right-handed alpha
Helix 40
AE4
C
50 63Right-handed alpha
Helix 41
AE5
C
66 76Right-handed alpha
Helix 42
AE6
C
85 94Right-handed alpha
Helix 43
AE7
C
94 107Right-handed alpha
Helix 44
AE8
C
126 134Right-handed alpha
Helix 45
AE9
C
137 153Right-handed alpha
Helix 46
AF1
C
154 157Right-handed 310
Helix 47
AF2
C
158 173Right-handed alpha
Helix 48
AF3
C
173 180Right-handed alpha
Helix 49
AF4
C
182 196Right-handed alpha
Helix 50
AF5
C
198 234Right-handed alpha
Helix 51
AF6
C
236 240Right-handed alpha
Helix 52
AF7
C
255 262Right-handed alpha
Helix 53
AF8
C
287 310Right-handed alpha
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There are 6 sheets in PDB entry 6S2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
274 282anti-parallel
Strand 3
A
343 350parallel
Strand 4
A
332 337anti-parallel
Strand 5
A
311 312anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
274 282anti-parallel
Strand 3
A
343 350parallel
Strand 4
A
332 337anti-parallel
Strand 5
A
318 319anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
274 282anti-parallel
Strand 3
B
343 350parallel
Strand 4
B
332 337anti-parallel
Strand 5
B
311 312anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
274 282anti-parallel
Strand 3
B
343 350parallel
Strand 4
B
332 337anti-parallel
Strand 5
B
318 319anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 247first strand
Strand 2
C
274 282anti-parallel
Strand 3
C
342 349parallel
Strand 4
C
332 338anti-parallel
Strand 5
C
311 312anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 247first strand
Strand 2
C
274 282anti-parallel
Strand 3
C
342 349parallel
Strand 4
C
332 338anti-parallel
Strand 5
C
318 319anti-parallel
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