Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S3D entry

There are 7 chains in PDB entry 6S3D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LYS 224
B	ASP 3	ARG 213
C	VAL 4	PRO 228
D	ARG 2	ARG 213
E	VAL 4	PRO 228
F	ASP 3	ARG 213
H	VAL 4	ALA 74

There are 39 helices in PDB entry 6S3D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	32	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	216	219	Right-handed 310
Helix 4	AA4	B	81	85	Right-handed 310
Helix 5	AA5	B	125	129	Right-handed alpha
Helix 6	AA6	C	30	32	Right-handed 310
Helix 7	AA7	C	89	93	Right-handed 310
Helix 8	AA8	C	216	219	Right-handed 310
Helix 9	AA9	D	81	85	Right-handed 310
Helix 10	AB1	D	123	129	Right-handed alpha
Helix 11	AB2	D	187	191	Right-handed 310
Helix 12	AB3	E	30	32	Right-handed 310
Helix 13	AB4	E	89	93	Right-handed 310
Helix 14	AB5	E	216	219	Right-handed 310
Helix 15	AB6	F	81	85	Right-handed 310
Helix 16	AB7	F	186	190	Right-handed 310
Helix 17	AB8	H	30	32	Right-handed 310
Helix 18	AB9	H	89	93	Right-handed 310
Helix 19	AC1	H	169	171	Right-handed 310
Helix 20	AC2	H	214	217	Right-handed 310
Helix 21	AC3	L	81	85	Right-handed 310
Helix 22	AC4	L	123	128	Right-handed alpha
Helix 23	AC5	L	185	189	Right-handed alpha
Helix 24	AC6	M	4	14	Right-handed alpha
Helix 25	AC7	M	15	22	Right-handed alpha
Helix 26	AC8	M	26	42	Right-handed alpha
Helix 27	AC9	M	46	52	Right-handed alpha
Helix 28	AD1	N	5	14	Right-handed alpha
Helix 29	AD2	N	14	23	Right-handed alpha
Helix 30	AD3	N	26	42	Right-handed alpha
Helix 31	AD4	N	46	53	Right-handed alpha
Helix 32	AD5	O	4	14	Right-handed alpha
Helix 33	AD6	O	15	21	Right-handed alpha
Helix 34	AD7	O	26	42	Right-handed alpha
Helix 35	AD8	O	46	52	Right-handed alpha
Helix 36	AD9	P	5	14	Right-handed alpha
Helix 37	AE1	P	15	21	Right-handed alpha
Helix 38	AE2	P	26	42	Right-handed alpha
Helix 39	AE3	P	46	54	Right-handed alpha

There are 40 sheets in PDB entry 6S3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	122	126	parallel
Strand 3	A	94	102	anti-parallel
Strand 4	A	34	41	anti-parallel
Strand 5	A	47	54	anti-parallel
Strand 6	A	59	62	anti-parallel
Strand 7	D	12	15	anti-parallel
Strand 8	D	104	108	parallel
Strand 9	D	86	92	anti-parallel
Strand 10	D	35	40	anti-parallel
Strand 11	D	47	51	anti-parallel
Strand 12	D	55	56	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	94	102	anti-parallel
Strand 3	A	34	41	anti-parallel
Strand 4	A	47	54	anti-parallel
Strand 5	A	59	62	anti-parallel
Strand 6	D	12	15	anti-parallel
Strand 7	D	104	108	parallel
Strand 8	D	86	92	anti-parallel
Strand 9	D	99	100	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	70	75	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	N	54	57	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	151	160	anti-parallel
Strand 3	A	191	199	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	151	160	anti-parallel
Strand 3	A	191	199	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	220	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	64	69	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	47	51	anti-parallel
Strand 3	B	35	40	anti-parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	104	108	anti-parallel
Strand 6	B	12	15	parallel
Strand 7	E	59	62	anti-parallel
Strand 8	E	47	54	anti-parallel
Strand 9	E	34	41	anti-parallel
Strand 10	E	94	102	anti-parallel
Strand 11	E	122	126	anti-parallel
Strand 12	E	12	14	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	104	108	anti-parallel
Strand 4	B	12	15	parallel
Strand 5	E	59	62	anti-parallel
Strand 6	E	47	54	anti-parallel
Strand 7	E	34	41	anti-parallel
Strand 8	E	94	102	anti-parallel
Strand 9	E	117	118	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	131	141	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	147	152	anti-parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	207	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	122	126	parallel
Strand 3	C	94	102	anti-parallel
Strand 4	C	34	41	anti-parallel
Strand 5	C	48	54	anti-parallel
Strand 6	C	59	62	anti-parallel
Strand 7	L	12	15	anti-parallel
Strand 8	L	104	108	parallel
Strand 9	L	86	92	anti-parallel
Strand 10	L	35	40	anti-parallel
Strand 11	L	47	51	anti-parallel
Strand 12	L	55	56	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	94	102	anti-parallel
Strand 3	C	34	41	anti-parallel
Strand 4	C	48	54	anti-parallel
Strand 5	C	59	62	anti-parallel
Strand 6	L	12	15	anti-parallel
Strand 7	L	104	108	parallel
Strand 8	L	86	92	anti-parallel
Strand 9	L	99	100	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	M	56	57	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	151	160	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	151	160	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	184	185	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	209	215	anti-parallel
Strand 3	C	220	226	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	64	69	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	175	181	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	152	first strand
Strand 2	D	193	199	anti-parallel
Strand 3	D	207	212	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	19	27	anti-parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	O	54	57	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	151	160	anti-parallel
Strand 3	E	191	199	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	151	160	anti-parallel
Strand 3	E	191	199	anti-parallel
Strand 4	E	184	185	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	169	first strand
Strand 2	E	210	215	anti-parallel
Strand 3	E	220	225	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	21	27	anti-parallel
Strand 3	F	72	77	anti-parallel
Strand 4	F	64	69	anti-parallel

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There are 12 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	35	40	anti-parallel
Strand 4	F	86	92	anti-parallel
Strand 5	F	104	108	anti-parallel
Strand 6	F	12	15	parallel
Strand 7	H	59	62	anti-parallel
Strand 8	H	47	54	anti-parallel
Strand 9	H	34	41	anti-parallel
Strand 10	H	94	102	anti-parallel
Strand 11	H	122	126	anti-parallel
Strand 12	H	12	14	parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	86	92	anti-parallel
Strand 3	F	104	108	anti-parallel
Strand 4	F	12	15	parallel
Strand 5	H	59	62	anti-parallel
Strand 6	H	47	54	anti-parallel
Strand 7	H	34	41	anti-parallel
Strand 8	H	94	102	anti-parallel
Strand 9	H	117	118	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	134	141	anti-parallel
Strand 3	F	175	181	anti-parallel
Strand 4	F	161	165	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	147	152	anti-parallel
Strand 3	F	194	199	anti-parallel
Strand 4	F	207	211	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	106	first strand
Strand 2	P	56	57	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	149	158	anti-parallel
Strand 3	H	189	197	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	149	158	anti-parallel
Strand 3	H	189	197	anti-parallel
Strand 4	H	182	183	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	167	first strand
Strand 2	H	209	213	anti-parallel
Strand 3	H	218	222	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	9	first strand
Strand 2	L	21	27	anti-parallel
Strand 3	L	72	77	anti-parallel
Strand 4	L	64	69	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	194	199	anti-parallel
Strand 4	L	207	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S3D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3D