Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S3E entry

There are 2 chains in PDB entry 6S3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 67	HIS 502
B	PRO 65	HIS 502

There are 35 helices in PDB entry 6S3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	80	Right-handed alpha
Helix 2	AA2	A	96	108	Right-handed alpha
Helix 3	AA3	A	118	125	Right-handed alpha
Helix 4	AA4	A	130	135	Right-handed alpha
Helix 5	AA5	A	156	165	Right-handed alpha
Helix 6	AA6	A	173	176	Right-handed 310
Helix 7	AA7	A	177	193	Right-handed alpha
Helix 8	AA8	A	197	202	Right-handed 310
Helix 9	AA9	A	220	231	Right-handed alpha
Helix 10	AB1	A	234	243	Right-handed 310
Helix 11	AB2	A	260	272	Right-handed alpha
Helix 12	AB3	A	274	286	Right-handed alpha
Helix 13	AB4	A	302	316	Right-handed alpha
Helix 14	AB5	A	333	337	Right-handed 310
Helix 15	AB6	A	431	435	Right-handed alpha
Helix 16	AB7	A	455	461	Right-handed alpha
Helix 17	AB8	A	465	467	Right-handed 310
Helix 18	AB9	A	476	480	Right-handed 310
Helix 19	AC1	A	483	493	Right-handed alpha
Helix 20	AC2	B	75	80	Right-handed alpha
Helix 21	AC3	B	97	108	Right-handed alpha
Helix 22	AC4	B	118	124	Right-handed alpha
Helix 23	AC5	B	129	134	Right-handed alpha
Helix 24	AC6	B	158	164	Right-handed alpha
Helix 25	AC7	B	177	192	Right-handed alpha
Helix 26	AC8	B	197	201	Right-handed 310
Helix 27	AC9	B	220	230	Right-handed alpha
Helix 28	AD1	B	234	238	Right-handed 310
Helix 29	AD2	B	260	272	Right-handed alpha
Helix 30	AD3	B	277	286	Right-handed alpha
Helix 31	AD4	B	302	316	Right-handed alpha
Helix 32	AD5	B	455	461	Right-handed alpha
Helix 33	AD6	B	465	467	Right-handed 310
Helix 34	AD7	B	476	481	Right-handed alpha
Helix 35	AD8	B	483	493	Right-handed alpha

There are 12 sheets in PDB entry 6S3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	112	116	parallel
Strand 3	A	167	171	parallel
Strand 4	A	203	208	parallel
Strand 5	A	86	90	parallel
Strand 6	A	246	250	parallel
Strand 7	A	497	498	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	297	300	parallel
Strand 3	A	442	444	parallel
Strand 4	A	469	471	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	343	345	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	418	420	anti-parallel
Strand 3	A	394	395	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	377	382	anti-parallel
Strand 3	A	367	374	anti-parallel
Strand 4	A	350	352	anti-parallel
Strand 5	A	424	425	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	401	first strand
Strand 2	A	412	416	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	248	249	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	167	170	parallel
Strand 3	B	203	206	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	441	444	parallel
Strand 3	B	469	471	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	B	342	345	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	330	first strand
Strand 2	B	413	420	anti-parallel
Strand 3	B	394	400	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	367	373	anti-parallel
Strand 4	B	350	353	anti-parallel
Strand 5	B	423	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3E