Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S3I entry

There are 2 chains in PDB entry 6S3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 68SER 501
C
 T 3 T 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6S3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 81Right-handed alpha
Helix 2
AA2
A
96 108Right-handed alpha
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
130 135Right-handed alpha
Helix 5
AA5
A
158 165Right-handed alpha
Helix 6
AA6
A
172 176Right-handed 310
Helix 7
AA7
A
177 192Right-handed alpha
Helix 8
AA8
A
197 202Right-handed 310
Helix 9
AA9
A
221 230Right-handed alpha
Helix 10
AB1
A
234 243Right-handed 310
Helix 11
AB2
A
260 272Right-handed alpha
Helix 12
AB3
A
275 285Right-handed alpha
Helix 13
AB4
A
287 292Right-handed 310
Helix 14
AB5
A
302 315Right-handed alpha
Helix 15
AB6
A
432 435Right-handed 310
Helix 16
AB7
A
454 461Right-handed alpha
Helix 17
AB8
A
465 467Right-handed 310
Helix 18
AB9
A
476 480Right-handed 310
Helix 19
AC1
A
483 493Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6S3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
112 116parallel
Strand 3
A
167 170parallel
Strand 4
A
203 208parallel
Strand 5
A
87 90parallel
Strand 6
A
246 250parallel
Strand 7
A
497 498anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
297 300parallel
Strand 3
A
442 444parallel
Strand 4
A
469 471parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
344 345anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
411 420anti-parallel
Strand 3
A
394 402anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
378 382anti-parallel
Strand 3
A
366 373anti-parallel
Strand 4
A
350 353anti-parallel
Strand 5
A
423 425anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il