Analysis of interatomic Contacts of Structural Units in PDB entry:
6S3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S3P entry

There are 2 chains in PDB entry 6S3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67HIS 502
B
 T 1 T 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6S3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 81Right-handed alpha
Helix 2
AA2
A
96 109Right-handed alpha
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
130 135Right-handed alpha
Helix 5
AA5
A
156 165Right-handed alpha
Helix 6
AA6
A
172 176Right-handed 310
Helix 7
AA7
A
177 193Right-handed alpha
Helix 8
AA8
A
197 202Right-handed 310
Helix 9
AA9
A
220 231Right-handed alpha
Helix 10
AB1
A
234 243Right-handed 310
Helix 11
AB2
A
254 260Right-handed alpha
Helix 12
AB3
A
260 272Right-handed alpha
Helix 13
AB4
A
276 286Right-handed alpha
Helix 14
AB5
A
287 293Right-handed 310
Helix 15
AB6
A
302 317Right-handed alpha
Helix 16
AB7
A
333 337Right-handed 310
Helix 17
AB8
A
431 435Right-handed alpha
Helix 18
AB9
A
454 461Right-handed alpha
Helix 19
AC1
A
465 467Right-handed 310
Helix 20
AC2
A
476 480Right-handed 310
Helix 21
AC3
A
483 493Right-handed alpha
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There are 5 sheets in PDB entry 6S3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
112 116parallel
Strand 3
A
167 170parallel
Strand 4
A
203 207parallel
Strand 5
A
86 90parallel
Strand 6
A
246 250parallel
Strand 7
A
497 498anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
297 300parallel
Strand 3
A
442 444parallel
Strand 4
A
469 471parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
342 345anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
410 420anti-parallel
Strand 3
A
394 403anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
367 374anti-parallel
Strand 4
A
350 353anti-parallel
Strand 5
A
423 425anti-parallel
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