Analysis of interatomic Contacts of Structural Units in PDB entry:
6S49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S49 entry

There are 2 chains in PDB entry 6S49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ARG 476
B	ASP 3	ARG 476

There are 38 helices in PDB entry 6S49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	33	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	70	80	Right-handed alpha
Helix 5	AA5	A	96	107	Right-handed alpha
Helix 6	AA6	A	129	133	Right-handed 310
Helix 7	AA7	A	134	149	Right-handed alpha
Helix 8	AA8	A	164	182	Right-handed alpha
Helix 9	AA9	A	190	202	Right-handed alpha
Helix 10	AB1	A	230	240	Right-handed alpha
Helix 11	AB2	A	296	306	Right-handed alpha
Helix 12	AB3	A	328	342	Right-handed alpha
Helix 13	AB4	A	352	354	Right-handed 310
Helix 14	AB5	A	383	390	Right-handed alpha
Helix 15	AB6	A	394	414	Right-handed alpha
Helix 16	AB7	A	423	425	Right-handed 310
Helix 17	AB8	A	426	435	Right-handed alpha
Helix 18	AB9	A	436	438	Right-handed 310
Helix 19	AC1	A	469	474	Right-handed alpha
Helix 20	AC2	B	20	33	Right-handed alpha
Helix 21	AC3	B	37	39	Right-handed 310
Helix 22	AC4	B	47	58	Right-handed alpha
Helix 23	AC5	B	70	80	Right-handed alpha
Helix 24	AC6	B	96	107	Right-handed alpha
Helix 25	AC7	B	129	133	Right-handed 310
Helix 26	AC8	B	134	149	Right-handed alpha
Helix 27	AC9	B	164	181	Right-handed alpha
Helix 28	AD1	B	190	202	Right-handed alpha
Helix 29	AD2	B	230	240	Right-handed alpha
Helix 30	AD3	B	296	306	Right-handed alpha
Helix 31	AD4	B	328	342	Right-handed alpha
Helix 32	AD5	B	352	354	Right-handed 310
Helix 33	AD6	B	383	390	Right-handed alpha
Helix 34	AD7	B	394	414	Right-handed alpha
Helix 35	AD8	B	423	425	Right-handed 310
Helix 36	AD9	B	426	435	Right-handed alpha
Helix 37	AE1	B	436	438	Right-handed 310
Helix 38	AE2	B	469	474	Right-handed alpha

There are 16 sheets in PDB entry 6S49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	34	35	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	41	44	parallel
Strand 3	A	14	17	parallel
Strand 4	A	87	90	parallel
Strand 5	A	110	112	parallel
Strand 6	A	155	157	parallel
Strand 7	A	419	421	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	326	first strand
Strand 2	A	205	212	parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	374	382	anti-parallel
Strand 5	A	441	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	347	350	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	267	273	anti-parallel
Strand 3	A	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	283	first strand
Strand 2	A	287	292	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	315	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	34	35	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	41	44	parallel
Strand 3	B	14	17	parallel
Strand 4	B	87	90	parallel
Strand 5	B	110	112	parallel
Strand 6	B	155	157	parallel
Strand 7	B	419	421	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	326	first strand
Strand 2	B	205	212	parallel
Strand 3	B	360	368	anti-parallel
Strand 4	B	374	382	anti-parallel
Strand 5	B	441	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	347	350	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	267	273	anti-parallel
Strand 3	B	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	287	292	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	315	317	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S49

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S49