Analysis of interatomic Contacts of Structural Units in PDB entry:
6S59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S59 entry

There are 2 chains in PDB entry 6S59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLN 1042
B
 VAL 5GLN 1042
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 6S59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 13Right-handed 310
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
52 57Right-handed 310
Helix 4
AA4
A
59 66Right-handed alpha
Helix 5
AA5
A
73 78Right-handed alpha
Helix 6
AA6
A
98 102Right-handed alpha
Helix 7
AA7
A
117 125Right-handed alpha
Helix 8
AA8
A
147 165Right-handed alpha
Helix 9
AA9
A
193 207Right-handed alpha
Helix 10
AB1
A
216 226Right-handed alpha
Helix 11
AB2
A
250 265Right-handed alpha
Helix 12
AB3
A
337 357Right-handed alpha
Helix 13
AB4
A
375 384Right-handed alpha
Helix 14
AB5
A
411 413Right-handed 310
Helix 15
AB6
A
414 420Right-handed alpha
Helix 16
AB7
A
424 449Right-handed alpha
Helix 17
AB8
A
452 474Right-handed alpha
Helix 18
AB9
A
480 492Right-handed alpha
Helix 19
AC1
A
493 495Right-handed 310
Helix 20
AC2
A
496 501Right-handed alpha
Helix 21
AC3
A
512 539Right-handed alpha
Helix 22
AC4
A
551 554Right-handed 310
Helix 23
AC5
A
555 572Right-handed alpha
Helix 24
AC6
A
576 595Right-handed alpha
Helix 25
AC7
A
602 622Right-handed alpha
Helix 26
AC8
A
626 647Right-handed alpha
Helix 27
AC9
A
652 654Right-handed 310
Helix 28
AD1
A
655 682Right-handed alpha
Helix 29
AD2
A
683 686Right-handed 310
Helix 30
AD3
A
691 721Right-handed alpha
Helix 31
AD4
A
735 748Right-handed alpha
Helix 32
AD5
A
748 753Right-handed alpha
Helix 33
AD6
A
757 782Right-handed alpha
Helix 34
AD7
A
787 811Right-handed alpha
Helix 35
AD8
A
812 837Right-handed alpha
Helix 36
AD9
A
841 846Right-handed alpha
Helix 37
AE1
A
870 880Right-handed alpha
Helix 38
AE2
A
889 894Right-handed alpha
Helix 39
AE3
A
897 910Right-handed alpha
Helix 40
AE4
A
928 938Right-handed alpha
Helix 41
AE5
A
946 951Right-handed alpha
Helix 42
AE6
A
971 976Right-handed alpha
Helix 43
AE7
A
1025 1039Right-handed alpha
Helix 44
AE8
B
32 38Right-handed alpha
Helix 45
AE9
B
59 67Right-handed alpha
Helix 46
AF1
B
73 78Right-handed alpha
Helix 47
AF2
B
99 101Right-handed 310
Helix 48
AF3
B
117 128Right-handed alpha
Helix 49
AF4
B
141 146Right-handed 310
Helix 50
AF5
B
147 165Right-handed alpha
Helix 51
AF6
B
194 207Right-handed alpha
Helix 52
AF7
B
216 227Right-handed alpha
Helix 53
AF8
B
250 266Right-handed alpha
Helix 54
AF9
B
287 293Right-handed alpha
Helix 55
AG1
B
333 336Right-handed 310
Helix 56
AG2
B
337 357Right-handed alpha
Helix 57
AG3
B
375 383Right-handed alpha
Helix 58
AG4
B
411 422Right-handed alpha
Helix 59
AG5
B
424 449Right-handed alpha
Helix 60
AG6
B
452 473Right-handed alpha
Helix 61
AG7
B
477 479Right-handed 310
Helix 62
AG8
B
480 492Right-handed alpha
Helix 63
AG9
B
495 501Right-handed alpha
Helix 64
AH1
B
511 540Right-handed alpha
Helix 65
AH2
B
552 554Right-handed 310
Helix 66
AH3
B
555 571Right-handed alpha
Helix 67
AH4
B
576 594Right-handed alpha
Helix 68
AH5
B
602 622Right-handed alpha
Helix 69
AH6
B
628 648Right-handed alpha
Helix 70
AH7
B
652 654Right-handed 310
Helix 71
AH8
B
655 682Right-handed alpha
Helix 72
AH9
B
691 722Right-handed alpha
Helix 73
AI1
B
734 748Right-handed alpha
Helix 74
AI2
B
757 766Right-handed alpha
Helix 75
AI3
B
768 782Right-handed alpha
Helix 76
AI4
B
789 811Right-handed alpha
Helix 77
AI5
B
812 835Right-handed alpha
Helix 78
AI6
B
840 846Right-handed alpha
Helix 79
AI7
B
870 879Right-handed alpha
Helix 80
AI8
B
889 894Right-handed alpha
Helix 81
AI9
B
898 910Right-handed alpha
Helix 82
AJ1
B
928 938Right-handed alpha
Helix 83
AJ2
B
946 951Right-handed alpha
Helix 84
AJ3
B
966 970Right-handed 310
Helix 85
AJ4
B
971 976Right-handed alpha
Helix 86
AJ5
B
1025 1042Right-handed alpha
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There are 12 sheets in PDB entry 6S59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
45 48parallel
Strand 3
A
69 70parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
107 110parallel
Strand 3
A
130 133parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
96 97anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
186 190parallel
Strand 3
A
270 273parallel
Strand 4
A
298 302parallel
Strand 5
A
325 328parallel
Strand 6
A
320 321anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
390 391anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
944 945first strand
Strand 2
A
916 918parallel
Strand 3
A
884 888parallel
Strand 4
A
959 963parallel
Strand 5
A
994 998parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
45 48parallel
Strand 3
B
69 70parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
96 97anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
130 133parallel
Strand 3
B
384 387anti-parallel
Strand 4
B
390 391anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
180 181anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
186 190parallel
Strand 3
B
270 273parallel
Strand 4
B
299 302parallel
Strand 5
B
326 328parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
944 945first strand
Strand 2
B
915 918parallel
Strand 3
B
884 888parallel
Strand 4
B
959 963parallel
Strand 5
B
994 999parallel
Strand 6
B
1022 1023parallel
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