Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S5M entry

There is 1 chain in PDB entry 6S5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6S5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 64Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
85 88Right-handed 310
Helix 5
AA5
A
149 156Right-handed alpha
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There are 7 sheets in PDB entry 6S5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
280 284anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
107 108parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
110 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
119 120anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
136 140anti-parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
172 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
218 223anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 232first strand
Strand 2
A
238 245anti-parallel
Strand 3
A
250 257anti-parallel
Strand 4
A
263 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il